J
Jeroen Raes
Researcher at Katholieke Universiteit Leuven
Publications - 293
Citations - 85097
Jeroen Raes is an academic researcher from Katholieke Universiteit Leuven. The author has contributed to research in topics: Microbiome & Medicine. The author has an hindex of 84, co-authored 240 publications receiving 66805 citations. Previous affiliations of Jeroen Raes include Flanders Institute for Biotechnology & Université catholique de Louvain.
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Journal ArticleDOI
Modeling gene and genome duplications in eukaryotes.
Steven Maere,Stefanie De Bodt,Jeroen Raes,Tineke Casneuf,Marc Van Montagu,Martin Kuiper,Yves Van de Peer +6 more
TL;DR: An evolutionary model that simulates the duplication dynamics of genes, considering genome-wide duplication events and a continuous mode of gene duplication is presented and it is shown that gene loss is strikingly different for large-scale and small-scale duplication Events and highly biased toward certain functional classes.
Journal ArticleDOI
Duplication and Divergence: The Evolution of New Genes and Old Ideas
John S. Taylor,Jeroen Raes +1 more
TL;DR: Concept and technological advances in gene duplication research from this early research in comparative cytology up to recent research on whole genomes, "transcriptomes," and "interactomes" are document.
Journal ArticleDOI
Determinants of community structure in the global plankton interactome
Gipsi Lima-Mendez,Karoline Faust,Nicolas Henry,Johan Decelle,Sébastien Colin,Fabrizio Carcillo,Samuel Chaffron,J. Cesar Ignacio-Espinosa,Simon Roux,Flora Vincent,Flora Vincent,Lucie Bittner,Youssef Darzi,Jun Wang,Stéphane Audic,Léo Berline,Gianluca Bontempi,Ana María Cabello,Laurent Coppola,Francisco M. Cornejo-Castillo,Francesco d'Ovidio,Luc De Meester,Isabel Ferrera,Marie-José Garet-Delmas,Lionel Guidi,Elena Lara,Stephane Pesant,Marta Royo-Llonch,Guillem Salazar,Pablo Sánchez,Marta Sebastián,Caroline Souffreau,Céline Dimier,Marc Picheral,Sarah Searson,Stefanie Kandels-Lewis,Tara Oceans Coordinators,Tara Oceans Coordinators,Gabriel Gorsky,Fabrice Not,Hiroyuki Ogata,Sabrina Speich,Lars Stemmann,Jean Weissenbach,Patrick Wincker,Silvia G. Acinas,Shinichi Sunagawa,Peer Bork,Matthew B. Sullivan,Eric Karsenti,Chris Bowler,Colomban de Vargas,Jeroen Raes +52 more
TL;DR: It is found that environmental factors are incomplete predictors of community structure and associations across plankton functional types and phylogenetic groups to be nonrandomly distributed on the network and driven by both local and global patterns.
Journal ArticleDOI
Genome-wide characterization of the lignification toolbox in Arabidopsis.
TL;DR: Together, these data describe the full complement of monolignol biosynthesis genes in Arabidopsis, provide a unified nomenclature, and serve as a basis for further functional studies.
Journal ArticleDOI
Quantitative microbiome profiling links gut community variation to microbial load
Doris Vandeputte,Doris Vandeputte,Gunter Kathagen,Kevin D'hoe,Kevin D'hoe,Sara Vieira-Silva,Mireia Valles-Colomer,João Sabino,Jun Wang,Raul Y. Tito,Raul Y. Tito,Lindsey De Commer,Youssef Darzi,Severine Vermeire,Gwen Falony,Jeroen Raes +15 more
TL;DR: Quantitative profiling bypasses compositionality effects in the reconstruction of gut microbiota interaction networks and reveals that the taxonomic trade-off between Bacteroides and Prevotella is an artefact of relative microbiome analyses.