J
Jianguo Lu
Researcher at Sun Yat-sen University
Publications - 103
Citations - 2835
Jianguo Lu is an academic researcher from Sun Yat-sen University. The author has contributed to research in topics: Gene & Catfish. The author has an hindex of 26, co-authored 85 publications receiving 2103 citations. Previous affiliations of Jianguo Lu include Chinese Academy of Fishery Sciences & Southwest Petroleum University.
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Journal ArticleDOI
ALLMAPS: robust scaffold ordering based on multiple maps
Haibao Tang,Haibao Tang,Xingtan Zhang,Chenyong Miao,Jisen Zhang,Ray Ming,James C. Schnable,Patrick S. Schnable,Eric Lyons,Jianguo Lu +9 more
TL;DR: AllMAPS is a method capable of computing a scaffold ordering that maximizes colinearity across a collection of maps, which is robust against common mapping errors, and generates sequences that are maximally concordant with the input maps.
Journal ArticleDOI
The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts.
Zhanjiang Liu,Shikai Liu,Jun Yao,Lisui Bao,Jiaren Zhang,Yun Li,Chen Jiang,Luyang Sun,Ruijia Wang,Yu Zhang,Tao Zhou,Qifan Zeng,Qiang Fu,Sen Gao,Ning Li,Sergey Koren,Yanliang Jiang,Aleksey V. Zimin,Peng Xu,Adam M. Phillippy,Xin Geng,Lin Song,Fanyue Sun,Chao Li,Xiaozhu Wang,Ailu Chen,Yulin Jin,Zihao Yuan,Yujia Yang,Suxu Tan,Eric Peatman,Jianguo Lu,Zhenkui Qin,Rex A. Dunham,Zhaoxia Li,Tad S. Sonstegard,Jianbin Feng,Roy G. Danzmann,Steven Schroeder,Brian E. Scheffler,Mary V. Duke,Linda L. Ballard,Huseyin Kucuktas,Ludmilla Kaltenboeck,Haixia Liu,Jonathan W. Armbruster,Yangjie Xie,Mona L. Kirby,Yi Tian,Mary Elizabeth Flanagan,Weijie Mu,Geoffrey C. Waldbieser +51 more
TL;DR: A high-quality reference genome sequence of channel catfish is reported, providing evidence that lack of secretory calcium-binding phosphoproteins accounts for the evolutionary loss of scales in catfish and demonstrates the power of comparative subtraction of candidate genes for traits of structural significance.
Journal ArticleDOI
RNA-seq analysis of mucosal immune responses reveals signatures of intestinal barrier disruption and pathogen entry following Edwardsiella ictaluri infection in channel catfish, Ictalurus punctatus.
Chao Li,Yu Zhang,Ruijia Wang,Jianguo Lu,Samiran Nandi,S. Mohanty,Jeffery S. Terhune,Zhanjiang Liu,Eric Peatman +8 more
TL;DR: The results set a foundation for future studies comparing mechanisms of pathogen entry and mucosal immunity across several important catfish pathogens including E. ictaluri, Edwardsiellatarda, Flavobacterium columnare, and virulent atypical Aeromonas hydrophila.
Journal ArticleDOI
Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array
Shikai Liu,Shikai Liu,Zunchun Zhou,Jianguo Lu,Fanyue Sun,Shaolin Wang,Hong Liu,Yanliang Jiang,Huseyin Kucuktas,Ludmilla Kaltenboeck,Eric Peatman,Zhanjiang Liu +11 more
TL;DR: The SNPs identified in this report will provide a much needed resource for genetic studies in catfish and will contribute to the development of a high-density SNP array.
Journal ArticleDOI
Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote
Shikai Liu,Shikai Liu,Yu Zhang,Zunchun Zhou,Geoff Waldbieser,Fanyue Sun,Jianguo Lu,Jiaren Zhang,Yanliang Jiang,Hao Zhang,Xiuli Wang,K.V. Rajendran,Lester H. Khoo,Huseyin Kucuktas,Eric Peatman,Zhanjiang Liu +15 more
TL;DR: The large set of transcripts assembled in this study is the most comprehensive set of genome resources ever developed from catfish, which will provide the much needed resources for functional genome research inCatfish, serving as a reference transcriptome for genome annotation, analysis of gene duplication, gene family structures, and digital gene expression analysis.