J
Jie Wu
Researcher at University of California, Irvine
Publications - 34
Citations - 955
Jie Wu is an academic researcher from University of California, Irvine. The author has contributed to research in topics: Medicine & Biology. The author has an hindex of 7, co-authored 21 publications receiving 582 citations. Previous affiliations of Jie Wu include University of California, Berkeley.
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Journal ArticleDOI
The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations
Alexandra B Keenan,Sherry L. Jenkins,Kathleen M. Jagodnik,Simon Koplev,Edward He,Denis Torre,Zichen Wang,Anders B. Dohlman,Moshe C. Silverstein,Alexander Lachmann,Maxim V. Kuleshov,Avi Ma'ayan,Vasileios Stathias,Raymond Terryn,Daniel J. Cooper,Michele Forlin,Amar Koleti,Dusica Vidovic,Caty Chung,Stephan C. Schürer,Jouzas Vasiliauskas,Marcin Pilarczyk,Behrouz Shamsaei,Mehdi Fazel,Yan Ren,Wen Niu,Nicholas A. Clark,Shana White,Naim Al Mahi,Lixia Zhang,Michal Kouril,John F. Reichard,Siva Sivaganesan,Mario Medvedovic,Jaroslaw Meller,Rick J. Koch,Marc R. Birtwistle,Ravi Iyengar,Eric A. Sobie,Evren U. Azeloglu,Julia A. Kaye,Jeannette Osterloh,Kelly Haston,Jaslin Kalra,Steve Finkbiener,Jonathan Z. Li,Pamela Milani,Miriam Adam,Renan Escalante-Chong,Karen Sachs,Alexander LeNail,Divya Ramamoorthy,Ernest Fraenkel,Gavin Daigle,Uzma Hussain,Alyssa Coye,Jeffrey D. Rothstein,Dhruv Sareen,Loren Ornelas,Maria G. Banuelos,Berhan Mandefro,Ritchie Ho,Clive N. Svendsen,Ryan G. Lim,Jennifer Stocksdale,Malcolm Casale,Terri G. Thompson,Jie Wu,Leslie M. Thompson,Victoria Dardov,Vidya Venkatraman,Andrea Matlock,Jennifer E. Van Eyk,Jacob D. Jaffe,Malvina Papanastasiou,Aravind Subramanian,Todd R. Golub,Sean D. Erickson,Mohammad Fallahi-Sichani,Marc Hafner,Nathanael S. Gray,Jia-Ren Lin,Caitlin E. Mills,Jeremy L. Muhlich,Mario Niepel,Caroline E. Shamu,Elizabeth H. Williams,David Wrobel,Peter K. Sorger,Laura M. Heiser,Joe W. Gray,James E. Korkola,Gordon B. Mills,Mark A. LaBarge,Mark A. LaBarge,Heidi S. Feiler,Mark A. Dane,Elmar Bucher,Michel Nederlof,Damir Sudar,Sean M. Gross,David Kilburn,Rebecca Smith,Kaylyn Devlin,Ron Margolis,Leslie Derr,Albert Lee,Ajay Pillai +107 more
TL;DR: The LINCS program focuses on cellular physiology shared among tissues and cell types relevant to an array of diseases, including cancer, heart disease, and neurodegenerative disorders.
Journal ArticleDOI
Huntington’s Disease iPSC-Derived Brain Microvascular Endothelial Cells Reveal WNT-Mediated Angiogenic and Blood-Brain Barrier Deficits
Ryan G. Lim,Chris Quan,Andrea M. Reyes-Ortiz,Sarah E. Lutz,Amanda J. Kedaigle,Theresa A. Gipson,Jie Wu,Gad D. Vatine,Jennifer Stocksdale,Malcolm Casale,Clive N. Svendsen,Ernest Fraenkel,David E. Housman,Dritan Agalliu,Leslie M. Thompson +14 more
TL;DR: In this article, a transcriptome and functional analysis of human induced pluripotent stem cell (iPSC)-derived brain microvascular endothelial cells (iBMECs) from HD patients or unaffected controls was performed.
Journal ArticleDOI
Modeling Psychomotor Retardation using iPSCs from MCT8-Deficient Patients Indicates a Prominent Role for the Blood-Brain Barrier
Gad D. Vatine,Abraham Al-Ahmad,Abraham Al-Ahmad,Bianca K. Barriga,Soshana P. Svendsen,Ariel Salim,Leslie Garcia,Veronica J. Garcia,Ritchie Ho,Yucer Nur,Tongcheng Qian,Ryan G. Lim,Jie Wu,Leslie M. Thompson,Weston R. Spivia,Zhaohui Chen,Jennifer E. Van Eyk,Sean P. Palecek,Samuel Refetoff,Eric V. Shusta,Clive N. Svendsen +20 more
TL;DR: The results therefore clarify the underlying physiological basis of this disorder, and they suggest that circumventing the diseased BBB to deliver active TH to the brain could be a viable therapeutic strategy.
Journal ArticleDOI
A Comparison of mRNA Sequencing with Random Primed and 3'-Directed Libraries.
Yuguang Xiong,Magali Soumillon,Jie Wu,Jens Hansen,Bin Hu,Johan G. C. van Hasselt,Gomathi Jayaraman,Ryan Lim,Mehdi Bouhaddou,Loren Ornelas,Loren Ornelas,James Bochicchio,Lindsay Lenaeus,Lindsay Lenaeus,Jennifer Stocksdale,Jaehee V. Shim,Emilda Gomez,Emilda Gomez,Dhruv Sareen,Dhruv Sareen,Clive N. Svendsen,Clive N. Svendsen,Leslie M. Thompson,Milind Mahajan,Ravi Iyengar,Eric A. Sobie,Evren U. Azeloglu,Marc R. Birtwistle,Marc R. Birtwistle +28 more
TL;DR: The potential cost savings associated with 3′-DGE approach are likely a reasonable tradeoff for modest reduction in sensitivity and inability to observe alternative splicing, and should enable many larger scale studies focusing on not only differential expression analysis, but also quantitative transcriptome profiling.
Posted ContentDOI
UFold: Fast and Accurate RNA Secondary Structure Prediction with Deep Learning
TL;DR: A deep learning-based method, called UFold, for RNA secondary structure prediction, trained directly on annotated data without any thermodynamic assumptions is proposed, which improves substantially upon previous models.