J
Jingwen Bai
Researcher at European Bioinformatics Institute
Publications - 5
Citations - 7242
Jingwen Bai is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: Biology & Software. The author has an hindex of 3, co-authored 4 publications receiving 3840 citations.
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Journal ArticleDOI
The PRIDE database and related tools and resources in 2019: improving support for quantification data.
Yasset Perez-Riverol,Attila Csordas,Jingwen Bai,Manuel Bernal-Llinares,Suresh Hewapathirana,Deepti J. Kundu,Avinash Inuganti,Johannes Griss,Johannes Griss,Gerhard Mayer,Martin Eisenacher,Enrique Perez,Julian Uszkoreit,Julianus Pfeuffer,Timo Sachsenberg,Şule Yılmaz,Shivani Tiwary,Juergen Cox,Enrique Audain,Mathias Walzer,Andrew F. Jarnuczak,Tobias Ternent,Alvis Brazma,Juan Antonio Vizcaíno +23 more
TL;DR: Key statistics on the current data contents and volume of downloads are outlined, and how PRIDE data are starting to be disseminated to added-value resources including Ensembl, UniProt and Expression Atlas are outlined.
Journal ArticleDOI
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences.
Yasset Perez-Riverol,Jingwen Bai,Chakradhar Bandla,David García-Seisdedos,Suresh Hewapathirana,Selvakumar Kamatchinathan,Deepti J. Kundu,Ananth Prakash,Anika Frericks-Zipper,Martin Eisenacher,Mathias Walzer,Shengbo Wang,Alvis Brazma,Juan Antonio Vizcaíno +13 more
TL;DR: The PRIDE database as discussed by the authors is the world's largest data repository of mass spectrometry-based proteomics data and is one of the founding members of the global ProteomeXchange (PX) consortium.
Journal ArticleDOI
BioContainers Registry: Searching Bioinformatics and Proteomics Tools, Packages, and Containers.
Jingwen Bai,Chakradhar Bandla,Jiaxin Guo,Roberto Vera Alvarez,Mingze Bai,Juan Antonio Vizcaíno,Pablo Moreno,Björn Grüning,Olivier Sallou,Yasset Perez-Riverol +9 more
TL;DR: BioContainers as discussed by the authors is an open-source project that aims to create, store, and distribute bioinformatics software containers and packages, including more than 200 proteomics and mass spectrometry tools.
Posted ContentDOI
BioContainers Registry: searching for bioinformatics tools, packages and containers
Jingwen Bai,Chakradhar Bandla,Jiaxin Guo,Roberto Vera Alvarez,Juan Antonio Vizcaíno,Mingze Bai,Pablo Moreno,Björn Grüning,Olivier Sallou,Yasset Perez-Riverol +9 more
TL;DR: The BioContainers Registry and Restful API are introduced to make containerized bioinformatics tools more findable, accessible, interoperable, and reusable (FAIR).