Jiri Holatko

Bio: Jiri Holatko is an academic researcher from Mendel University. The author has contributed to research in topics: Biochar & Soil carbon. The author has an hindex of 4, co-authored 19 publications receiving 117 citations.

Coupling Phosphate-Solubilizing Bacteria with Phosphorus Supplements Improve Maize Phosphorus Acquisition and Growth under Lime Induced Salinity Stress.

Abstract: Global warming promotes soil calcification and salinization processes. As a result, soil phosphorus (P) is becoming deficient in arid and semiarid areas throughout the world. In this pot study, we evaluated the potential of phosphate-solubilizing bacteria (PSB) for enhancing the growth and P uptake in maize under varying levels of lime (4.8%, 10%, 15% and 20%) and additional P supplements (farmyard manure, poultry manure, single super phosphate and rock phosphate) added at the rate of 45 mg P2O5 kg-1. Inoculation and application of P as organic manures (Poultry and farm yard manures) improved maize growth and P uptake compared to the control and soils with P applied from mineral sources. Liming adversely affected crop growth, but the use of PSB and organic manure significantly neutralized this harmful effect. Mineral P sources combined with PSB were as effective as the organic sources alone. Furthermore, while single supper phosphate showed better results than Rock phosphate, the latter performed comparably upon PSB inoculation. Thus, PSB plus P application as organic manures is an eco-friendly option to improve crop growth and P nutrition in a calcareous soil under changing climate.

Rhizosphere Bacteria in Plant Growth Promotion, Biocontrol, and Bioremediation of Contaminated Sites: A Comprehensive Review of Effects and Mechanisms.

Abstract: Agriculture in the 21st century is facing multiple challenges, such as those related to soil fertility, climatic fluctuations, environmental degradation, urbanization, and the increase in food demand for the increasing world population. In the meanwhile, the scientific community is facing key challenges in increasing crop production from the existing land base. In this regard, traditional farming has witnessed enhanced per acre crop yields due to irregular and injudicious use of agrochemicals, including pesticides and synthetic fertilizers, but at a substantial environmental cost. Another major concern in modern agriculture is that crop pests are developing pesticide resistance. Therefore, the future of sustainable crop production requires the use of alternative strategies that can enhance crop yields in an environmentally sound manner. The application of rhizobacteria, specifically, plant growth-promoting rhizobacteria (PGPR), as an alternative to chemical pesticides has gained much attention from the scientific community. These rhizobacteria harbor a number of mechanisms through which they promote plant growth, control plant pests, and induce resistance to various abiotic stresses. This review presents a comprehensive overview of the mechanisms of rhizobacteria involved in plant growth promotion, biocontrol of pests, and bioremediation of contaminated soils. It also focuses on the effects of PGPR inoculation on plant growth survival under environmental stress. Furthermore, the pros and cons of rhizobacterial application along with future directions for the sustainable use of rhizobacteria in agriculture are discussed in depth.

Long-Term Effects of Biochar-Based Organic Amendments on Soil Microbial Parameters

Abstract: Biochar application to the soil has been recommended as a carbon (C) management approach to sequester C and improve soil quality. Three-year experiments were conducted to investigate the interactive effects of three types of amendments on microbial biomass carbon, soil dehydrogenase activity and soil microbial community abundance in luvisols of arable land in the Czech Republic. Four different treatments were studied, which were, only NPK as a control, NPK + cattle manure, NPK + biochar and NPK + combination of manure with biochar. The results demonstrate that all amendments were effective in increasing the fungal and bacterial biomass, as is evident from the increased values of bacterial and fungal phospholipid fatty acid analysis. The ammonia-oxidizing bacteria population increases with the application of biochar, and it reaches its maximum value when biochar is applied in combination with manure. The overall results suggest that co-application of biochar with manure changes soil properties in favor of increased microbial biomass. It was confirmed that the application of biochar might increase or decrease soil activity, but its addition, along with manure, always promotes microbial abundance and their activity. The obtained results can be used in the planning and execution of the biochar-based soil amendments.

Humic Acid Mitigates the Negative Effects of High Rates of Biochar Application on Microbial Activity

Abstract: Objective: Biochar and a commercial humic acid-rich product, Humac (modified leonardite), represent soil amendments with the broad and beneficial effects on various soil properties. Their combination has been scarcely tested so far, although the positive impact of their interaction might be desirable. Materials and Methods: The dehydrogenase activity (DHA), microbial biomass carbon (Cmic), soil respiration (basal and substrate-induced), enzyme activities, total carbon (Ctot), and both shoot and root biomass yield were measured and compared in the short-term pot experiment with the lettuce seedlings. The following treatments were tested: the unamended soil (control), the Humac-amended soil (0.8 g·kg−1), the biochar-amended soil (low biochar 32 g·kg−1, high biochar 80 g·kg−1), and the soil-amended with biochar + Humac. Results: The effect of both amendments on the soil pH was insignificant. The highest average values of Ctot and Cmic were detected in high biochar treatment and the highest average values of basal and substrate-induced respiration (glucose, glucosamine, alanine) were detected in the low biochar treatment. The phosphatase activity and fresh and dry lettuce aboveground biomass were the highest in the low biochar + Humac treatment. Conclusions: Even though the combination of both biochar + Humac decreased the microbial activities in the amended soil (Cmic, DHA, enzymes, substrate-induced respiration) at the low biochar dose, they mitigated the detrimental effect of the high biochar dose on respiration (all the types) and the enzyme (phosphatase, arylsulphatase) activities. In contrast to the previously published research in this issue, the effects could not be attributed to the change of the soil pH.

Soil enzymes: Kuprevich, V. F. & Shcherbakova, T. A.: Translated from the Russian edition (1966), published by the Indian National Scientific Documentation Centre, New Delhi 1971. 392 pp., offset printing from type script, paper cover. Obtainable from U.S. Department of Commerce, National Technical Information Service, Springfield, Va. 22151

Abstract: B6nassy, C., 1955. R6marques sur deux Aphelinid6s: Aphelinus mytilaspidis Le Baron et Aphytis proclia Walker. Annls l~piphyt. 6: 11-17. Lord, F. T. & MacPhee, A. W., 1953. The influence of spray programs on the fauna of apple orchards in Nova Scotia II. Oyster shell scale. Can. Ent. 79: 196-209. Pickett, A. D., 1946. A progress report on long term spray programs. Rep. Nova Scotia Fruit Grow. Ass. 83 : 27-31. Pickett, A. D., 1967. The influence of spray programs on the fauna of apple orchards in Nova Scotia XIV. Can. Ent. 97: 816-821. Tothill, J. D., 1918. The predacious mite Hemisarcoptes malus Shimer and its relation to the natural control of the oyster shell scale Lepidosaphes ulmi L. Agric. Gaz. Can. 5 : 234-239.

Fate of soil applied black carbon: downward migration, leaching and soil respiration [Approved article]

Abstract: Black carbon (BC) is an important pool of the global C cycle, because it cycles much more slowly than others and may even be managed for C sequestration. Using stable isotope techniques, we investigated the fate of BC applied to a savanna Oxisol in Colombia at rates of 0, 11.6, 23.2 and 116.1 t BC ha -1 , as well as its effect on non-BC soil organic C. During the rainy seasons of 2005 and 2006, soil respiration was measured using soda lime traps, particulate and dissolved organic C (POC and DOC) moving by saturated flow was sampled continuously at 0.15 and 0.3 m, and soil was sampled to 2.0 m. Black C was found below the application depth of 0-0.1 m in the 0.15-0.3 m depth interval, with migration rates of 52.4 ± 14.5, 51.8 ± 18.5 and 378.7 ± 196.9 kg C ha -1 yr -1 (± SE) where 11.6, 23.2 and 116.1 t BC ha -1 , respectively, had been applied. Over 2 years after application, 2.2% of BC applied at 23.2 t BCha -1 was lost by respiration, and an even smaller fraction of 1% was mobilized by percolating water. Carbon from BC moved to a greater extent as DOC than POC. The largest flux of BC from the field (20-53% of applied BC) was not accounted for by our measurements and is assumed to have occurred by surface runoff during intense rain events. Black C caused a 189% increase in aboveground biomass production measured 5 months after application (2.4-4.5 additional dry biomass ha -1 where BC was applied), and this resulted in greater amounts of non-BC being respired, leached and found in soil for the duration of the experiment. These increases can be quantitatively explained by estimates of greater belowground net primary productivity with BC addition.

Biochar stability in soil: Meta-analysis of decomposition and priming effects

Abstract: The stability and decomposition of biochar are fundamental to understand its persistence in soil, its contribution to carbon (C) sequestration, and thus its role in the global C cycle. Our current knowledge about the degradability of biochar, however, is limited. Using 128 observations of biochar‐derived CO2 from 24 studies with stable (13C) and radioactive (14C) carbon isotopes, we meta‐analyzed the biochar decomposition in soil and estimated its mean residence time (MRT). The decomposed amount of biochar increased logarithmically with experimental duration, and the decomposition rate decreased with time. The biochar decomposition rate varied significantly with experimental duration, feedstock, pyrolysis temperature, and soil clay content. The MRTs of labile and recalcitrant biochar C pools were estimated to be about 108 days and 556 years with pool sizes of 3% and 97%, respectively. These results show that only a small part of biochar is bioavailable and that the remaining 97% contribute directly to long‐term C sequestration in soil. The second database (116 observations from 21 studies) was used to evaluate the priming effects after biochar addition. Biochar slightly retarded the mineralization of soil organic matter (SOM; overall mean: −3.8%, 95% CI = −8.1–0.8%) compared to the soil without biochar addition. Significant negative priming was common for studies with a duration shorter than half a year (−8.6%), crop‐derived biochar (−20.3%), fast pyrolysis (−18.9%), the lowest pyrolysis temperature (−18.5%), and small application amounts (−11.9%). In contrast, biochar addition to sandy soils strongly stimulated SOM mineralization by 20.8%. This indicates that biochar stimulates microbial activities especially in soils with low fertility. Furthermore, abiotic and biotic processes, as well as the characteristics of biochar and soils, affecting biochar decomposition are discussed. We conclude that biochar can persist in soils on a centennial scale and that it has a positive effect on SOM dynamics and thus on C sequestration.

Impact of Agrochemicals on Soil Microbiota and Management: A Review

Abstract: The World Health Organization (WHO) states that in developing nations, there are three million cases of agrochemical poisoning. The prolonged intensive and indiscriminate use of agrochemicals adversely affected the soil biodiversity, agricultural sustainability, and food safety, bringing in long-term harmful effects on nutritional security, human and animal health. Most of the agrochemicals negatively affect soil microbial functions and biochemical processes. The alteration in diversity and composition of the beneficial microbial community can be unfavorable to plant growth and development either by reducing nutrient availability or by increasing disease incidence. Currently, there is a need for qualitative, innovative, and demand-driven research in soil science, especially in developing countries for facilitating of high-quality eco-friendly research by creating a conducive and trustworthy work atmosphere, thereby rewarding productivity and merits. Hence, we reviewed (1) the impact of various agrochemicals on the soil microbial diversity and environment; (2) the importance of smallholder farmers for sustainable crop protection and enhancement solutions, and (3) management strategies that serve the scientific community, policymakers, and land managers in integrating soil enhancement and sustainability practices in smallholder farming households. The current review provides an improved understanding of agricultural soil management for food and nutritional security.

Drought Stress Impacts on Plants and Different Approaches to Alleviate Its Adverse Effects.

Abstract: Drought stress, being the inevitable factor that exists in various environments without recognizing borders and no clear warning thereby hampering plant biomass production, quality, and energy. It is the key important environmental stress that occurs due to temperature dynamics, light intensity, and low rainfall. Despite this, its cumulative, not obvious impact and multidimensional nature severely affects the plant morphological, physiological, biochemical and molecular attributes with adverse impact on photosynthetic capacity. Coping with water scarcity, plants evolve various complex resistance and adaptation mechanisms including physiological and biochemical responses, which differ with species level. The sophisticated adaptation mechanisms and regularity network that improves the water stress tolerance and adaptation in plants are briefly discussed. Growth pattern and structural dynamics, reduction in transpiration loss through altering stomatal conductance and distribution, leaf rolling, root to shoot ratio dynamics, root length increment, accumulation of compatible solutes, enhancement in transpiration efficiency, osmotic and hormonal regulation, and delayed senescence are the strategies that are adopted by plants under water deficit. Approaches for drought stress alleviations are breeding strategies, molecular and genomics perspectives with special emphasis on the omics technology alteration i.e., metabolomics, proteomics, genomics, transcriptomics, glyomics and phenomics that improve the stress tolerance in plants. For drought stress induction, seed priming, growth hormones, osmoprotectants, silicon (Si), selenium (Se) and potassium application are worth using under drought stress conditions in plants. In addition, drought adaptation through microbes, hydrogel, nanoparticles applications and metabolic engineering techniques that regulate the antioxidant enzymes activity for adaptation to drought stress in plants, enhancing plant tolerance through maintenance in cell homeostasis and ameliorates the adverse effects of water stress are of great potential in agriculture.