John C. Crocker

Bio: John C. Crocker is an academic researcher from University of Pennsylvania. The author has contributed to research in topics: Microrheology & Colloidal crystal. The author has an hindex of 52, co-authored 132 publications receiving 15356 citations. Previous affiliations of John C. Crocker include Georgia Institute of Technology & University of Chicago.

Three-Dimensional Direct Imaging of Structural Relaxation Near the Colloidal Glass Transition

Abstract: Confocal microscopy was used to directly observe three-dimensional dynamics of particles in colloidal supercooled fluids and colloidal glasses. The fastest particles moved cooperatively; connected clusters of these mobile particles could be identified; and the cluster size distribution, structure, and dynamics were investigated. The characteristic cluster size grew markedly in the supercooled fluid as the glass transition was approached, in agreement with computer simulations; at the glass transition, however, there was a sudden drop in their size. The clusters of fast-moving particles were largest near the α-relaxation time scale for supercooled colloidal fluids, but were also present, albeit with a markedly different nature, at shorter β-relaxation time scales, in both supercooled fluid and glass colloidal phases.

Two-point microrheology of inhomogeneous soft materials.

Abstract: Many interesting and important materials such as polymers, gels, and biomaterials are viscoelastic; when responding to an external stress, they both store and dissipate energy. This behavior is quantified by the complex shear modulus, Gv, which provides insight into the material’s microscopic dynamics. Typically, Gv is measured by applying oscillatory strain to a sample and measuring the resulting stress. Recently a new method, called microrheology, has been developed which determines Gv from the thermal motion of microscopic tracer particles embedded in the material [1,2]. Microrheology offers significant potential advantages: it provides a local probe of Gv in miniscule sample volumes and can do so at very high frequencies. While microrheology provides an accurate measure of Gv for simple systems, its validity in common complex systems is far from certain. If the tracers locally modify the structure of the medium, or sample only pores in an inhomogeneous matrix, then bulk rheological properties will not be determined. Such subtle effects currently limit many interesting applications of microrheology. In this Letter, we introduce a new formalism, which we term “two-point microrheology,” based on measuring the cross-correlated thermal motion of pairs of tracer particles to determine Gv. This new technique overcomes the limitations of single-particle microrheology. It does not depend on the size or shape of the tracer particle; moreover it is independent of the coupling between the tracer and the medium. We demonstrate the validity of this approach with measurements on a highly inhomogeneous material, a solution of the polysaccharide guar. Two-point microrheology correctly reproduces results obtained with a mechanical rheometer, whereas single-particle microrheology gives erroneous results. We also compare ordinary and two-point microrheology of F-actin [2–4], a semiflexible biopolymer constituent of the cytoskeleton. Different results are obtained with the two techniques, suggesting that earlier interpretations of F-actin microrheology should be reexamined.

Microscopic measurement of the pair interaction potential of charge-stabilized colloid.

Abstract: We present a microscopic measurement of the interaction potential between isolated pairs of charged colloidal spheres. The measured spatial dependence of the potential is consistent with the screened Coulomb repulsion expected from the Derjaguin-Landau-Verwey-Overbeek theory of colloidal interactions.

Prestressed F-actin networks cross-linked by hinged filamins replicate mechanical properties of cells

Abstract: We show that actin filaments, shortened to physiological lengths by gelsolin and cross-linked with recombinant human filamins (FLNs), exhibit dynamic elastic properties similar to those reported for live cells. To achieve elasticity values of comparable magnitude to those of cells, the in vitro network must be subjected to external prestress, which directly controls network elasticity. A molecular requirement for the strain-related behavior at physiological conditionsis a flexible hinge found in FLNa and some FLNb molecules. Basic physical properties of the in vitro filamin–F-actin network replicate the essential mechanical properties of living cells. This physical behavior could accommodate passive deformation and internal organelle trafficking at low strains yet resist externally or internally generated high shear forces.

Fast parallel algorithms for short-range molecular dynamics

Abstract: Three parallel algorithms for classical molecular dynamics are presented. The first assigns each processor a fixed subset of atoms; the second assigns each a fixed subset of inter-atomic forces to compute; the third assigns each a fixed spatial region. The algorithms are suitable for molecular dynamics models which can be difficult to parallelize efficiently—those with short-range forces where the neighbors of each atom change rapidly. They can be implemented on any distributed-memory parallel machine which allows for message-passing of data between independently executing processors. The algorithms are tested on a standard Lennard-Jones benchmark problem for system sizes ranging from 500 to 100,000,000 atoms on several parallel supercomputers--the nCUBE 2, Intel iPSC/860 and Paragon, and Cray T3D. Comparing the results to the fastest reported vectorized Cray Y-MP and C90 algorithm shows that the current generation of parallel machines is competitive with conventional vector supercomputers even for small problems. For large problems, the spatial algorithm achieves parallel efficiencies of 90% and a 1840-node Intel Paragon performs up to 165 faster than a single Cray C9O processor. Trade-offs between the three algorithms and guidelines for adapting them to more complex molecular dynamics simulations are also discussed.

疟原虫var基因转换速率变化导致抗原变异[英]／Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

Abstract: 抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1（PfPMP1）与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用，在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员，通过启动转录不同的var基因变异体为抗原变异提供了分子基础。

Capillary flow as the cause of ring stains from dried liquid drops

Abstract: When a spilled drop of coffee dries on a solid surface, it leaves a dense, ring-like deposit along the perimeter (Fig 1a) The coffee—initially dispersed over the entire drop—becomes concentrated into a tiny fraction of it Such ring deposits are common wherever drops containing dispersed solids evaporate on a surface, and they influence processes such as printing, washing and coating1,2,3,4,5 Ring deposits also provide a potential means to write or deposit a fine pattern onto a surface Here we ascribe the characteristic pattern of the deposition to a form of capillary flow in which pinning of the contact line of the drying drop ensures that liquid evaporating from the edge is replenished by liquid from the interior The resulting outward flow can carry virtually all the dispersed material to the edge This mechanism predicts a distinctive power-law growth of the ring mass with time—a law independent of the particular substrate, carrier fluid or deposited solids We have verified this law by microscopic observations of colloidal fluids

A revolution in optical manipulation

Abstract: Optical tweezers use the forces exerted by a strongly focused beam of light to trap and move objects ranging in size from tens of nanometres to tens of micrometres. Since their introduction in 1986, the optical tweezer has become an important tool for research in the fields of biology, physical chemistry and soft condensed matter physics. Recent advances promise to take optical tweezers out of the laboratory and into the mainstream of manufacturing and diagnostics; they may even become consumer products. The next generation of single-beam optical traps offers revolutionary new opportunities for fundamental and applied research.