John E. Sader

Bio: John E. Sader is an academic researcher from University of Melbourne. The author has contributed to research in topics: Cantilever & Boltzmann equation. The author has an hindex of 54, co-authored 213 publications receiving 13612 citations. Previous affiliations of John E. Sader include Trinity College, Dublin & University of New South Wales.

Calibration of rectangular atomic force microscope cantilevers

Abstract: A method to determine the spring constant of a rectangular atomic force microscope cantilever is proposed that relies solely on the measurement of the resonant frequency and quality factor of the cantilever in fluid (typically air), and knowledge of its plan view dimensions. This method gives very good accuracy and improves upon the previous formulation by Sader et al. [Rev. Sci. Instrum. 66, 3789 (1995)] which, unlike the present method, requires knowledge of both the cantilever density and thickness.

Frequency response of cantilever beams immersed in viscous fluids with applications to the atomic force microscope

Abstract: The vibrational characteristics of a cantilever beam are well known to strongly depend on the fluid in which the beam is immersed. In this paper, we present a detailed theoretical analysis of the frequency response of a cantilever beam, that is immersed in a viscous fluid and excited by an arbitrary driving force. Due to its practical importance in application to the atomic force microscope (AFM), we consider in detail the special case of a cantilever beam that is excited by a thermal driving force. This will incorporate the presentation of explicit analytical formulae and numerical results, which will be of value to the users and designers of AFM cantilever beams.

Method for the calibration of atomic force microscope cantilevers

Abstract: The determination of the spring constants of atomic force microscope (AFM) cantilevers is of fundamental importance to users of the AFM. In this paper, a fast and nondestructive method for the evaluation of the spring constant which relies solely on the determination of the unloaded resonant frequency of the cantilever, a knowledge of its density or mass, and its dimensions is proposed. This is in contrast to the method of Cleveland et al. [Rev. Sci. Instrum. 64, 403 (1993)], which requires the attachment of masses to the cantilever in the determination of the spring constant. A number of factors which can influence the resonant frequency are examined, in particular (i) gold coating, which can result in a dramatic variation in the resonant frequency, for which a theoretical account is presented and (ii) air damping which, it is found, leads to a shift of -4% in the resonant frequency down on its value in a vacuum. Furthermore, the point of load on the cantilever is found to be extremely important, since a small variation in the load point can lead to a dramatic variation in the spring constant. Theoretical results that account for this variation, which, it is believed will be of great practical value to the users of the AFM, are given. © 1995 American Institute of Physics.

Accurate formulas for interaction force and energy in frequency modulation force spectroscopy

Abstract: Frequency modulation atomic force microscopy utilizes the change in resonant frequency of a cantilever to detect variations in the interaction force between cantilever tip and sample. While a simple relation exists enabling the frequency shift to be determined for a given force law, the required complementary inverse relation does not exist for arbitrary oscillation amplitudes of the cantilever. In this letter we address this problem and present simple yet accurate formulas that enable the interaction force and energy to be determined directly from the measured frequency shift. These formulas are valid for any oscillation amplitude and interaction force, and are therefore of widespread applicability in frequency modulation dynamic force spectroscopy.

Normal and torsional spring constants of atomic force microscope cantilevers

Abstract: Two methods commonly used to measure the normal spring constants of atomic force microscope cantilevers are the added mass method of Cleveland et al. [J. P. Cleveland et al., Rev. Sci. Instrum. 64, 403 (1993)], and the unloaded resonance technique of Sader et al. [J. E. Sader, J. W. M. Chon, and P. Mulvaney, Rev. Sci. Instrum. 70, 3967 (1999)]. The added mass method involves measuring the change in resonant frequency of the fundamental mode of vibration upon the addition of known masses to the free end of the cantilever. In contrast, the unloaded resonance technique requires measurement of the unloaded resonant frequency and quality factor of the fundamental mode of vibration, as well as knowledge of the plan view dimensions of the cantilever and properties of the fluid. In many applications, such as frictional force microscopy, the torsional spring constant is often required. Consequently, in this article, we extend both of these techniques to allow simultaneous calibration of both the normal and torsional spring constants. We also investigate the validity and applicability of the unloaded resonance method when a mass is attached to the free end of the cantilever due to its importance in practice.

Fast parallel algorithms for short-range molecular dynamics

Abstract: Three parallel algorithms for classical molecular dynamics are presented. The first assigns each processor a fixed subset of atoms; the second assigns each a fixed subset of inter-atomic forces to compute; the third assigns each a fixed spatial region. The algorithms are suitable for molecular dynamics models which can be difficult to parallelize efficiently—those with short-range forces where the neighbors of each atom change rapidly. They can be implemented on any distributed-memory parallel machine which allows for message-passing of data between independently executing processors. The algorithms are tested on a standard Lennard-Jones benchmark problem for system sizes ranging from 500 to 100,000,000 atoms on several parallel supercomputers--the nCUBE 2, Intel iPSC/860 and Paragon, and Cray T3D. Comparing the results to the fastest reported vectorized Cray Y-MP and C90 algorithm shows that the current generation of parallel machines is competitive with conventional vector supercomputers even for small problems. For large problems, the spatial algorithm achieves parallel efficiencies of 90% and a 1840-node Intel Paragon performs up to 165 faster than a single Cray C9O processor. Trade-offs between the three algorithms and guidelines for adapting them to more complex molecular dynamics simulations are also discussed.

疟原虫var基因转换速率变化导致抗原变异[英]／Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

Abstract: 抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1（PfPMP1）与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用，在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员，通过启动转录不同的var基因变异体为抗原变异提供了分子基础。

Gold nanoparticles: assembly, supramolecular chemistry, quantum-size-related properties, and applications toward biology, catalysis, and nanotechnology.

Abstract: Although gold is the subject of one of the most ancient themes of investigation in science, its renaissance now leads to an exponentially increasing number of publications, especially in the context of emerging nanoscience and nanotechnology with nanoparticles and self-assembled monolayers (SAMs). We will limit the present review to gold nanoparticles (AuNPs), also called gold colloids. AuNPs are the most stable metal nanoparticles, and they present fascinating aspects such as their assembly of multiple types involving materials science, the behavior of the individual particles, size-related electronic, magnetic and optical properties (quantum size effect), and their applications to catalysis and biology. Their promises are in these fields as well as in the bottom-up approach of nanotechnology, and they will be key materials and building block in the 21st century. Whereas the extraction of gold started in the 5th millennium B.C. near Varna (Bulgaria) and reached 10 tons per year in Egypt around 1200-1300 B.C. when the marvelous statue of Touthankamon was constructed, it is probable that “soluble” gold appeared around the 5th or 4th century B.C. in Egypt and China. In antiquity, materials were used in an ecological sense for both aesthetic and curative purposes. Colloidal gold was used to make ruby glass 293 Chem. Rev. 2004, 104, 293−346

Boundary Layer Theory

Abstract: The boundary layer equations for plane, incompressible, and steady flow are $$\matrix{ {u{{\partial u} \over {\partial x}} + v{{\partial u} \over {\partial y}} = - {1 \over \varrho }{{\partial p} \over {\partial x}} + v{{{\partial ^2}u} \over {\partial {y^2}}},} \cr {0 = {{\partial p} \over {\partial y}},} \cr {{{\partial u} \over {\partial x}} + {{\partial v} \over {\partial y}} = 0.} \cr }$$