J
John Lyle
Researcher at Pacific Biosciences
Publications - 35
Citations - 3963
John Lyle is an academic researcher from Pacific Biosciences. The author has contributed to research in topics: Biology & Internal medicine. The author has an hindex of 12, co-authored 27 publications receiving 3788 citations.
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Journal ArticleDOI
Real-Time DNA Sequencing from Single Polymerase Molecules
John Eid,Adrian Fehr,Jeremy Gray,Khai Luong,John Lyle,Geoff Otto,Paul Peluso,David R. Rank,Primo Baybayan,Brad Bettman,Arkadiusz Bibillo,Keith Bjornson,Bidhan Chaudhuri,Fred Christians,Ronald L. Cicero,Sonya Clark,Ravindra V. Dalal,Alex DeWinter,John Dixon,Mathieu Foquet,Alfred Gaertner,Paul Hardenbol,Cheryl Heiner,Kevin Hester,David P. Holden,Gregory J. Kearns,Xiangxu Kong,Ronald Kuse,Yves Lacroix,Steven Lin,Paul Lundquist,Congcong Ma,Patrick Marks,Mark Maxham,Devon Murphy,Insil Park,Thang Pham,Michael Phillips,Joy Roy,Robert Sebra,Gene Shen,Jon M. Sorenson,Austin B. Tomaney,Kevin Travers,Mark Trulson,John Vieceli,Jeffrey Wegener,Dawn Wu,Alicia Yang,Denis Zaccarin,Peter Zhao,Frank Zhong,Jonas Korlach,Stephen Turner +53 more
TL;DR: Single-molecule, real-time sequencing data obtained from a DNA polymerase performing uninterrupted template-directed synthesis using four distinguishable fluorescently labeled deoxyribonucleoside triphosphates (dNTPs) are presented.
Patent
Polymerases for nucleotide analogue incorporation
David K. Hanzel,Geoff Otto,Devon Murphy,Paul Peluso,Thang Pham,David R. Rank,Paul Mitsis,Fred Christians,Arek Bibillo,Insil Park,Sonya Clark,John Lyle +11 more
TL;DR: In this article, compositions of polymerases with features for improving entry of nucleotide analogues into active site regions and for coordinating with the nucleotide analogue in the active site region are provided.
Patent
Articles having localized molecules disposed thereon and methods of producing same
David R. Rank,Jeffery Wegener,Jonas Korlach,Daniel B. Roitman,Yue Xu,John Lyle,Stephen Turner,Paul Peluso,Geoff Otto +8 more
TL;DR: In this paper, the authors employ elements of the substrates in assisting the localization of active chemical groups in desired regions of the substrate, which may include optical, chemical and/or mechanical processes for the deposition, removal, activation, and deactivation of chemical groups.
Patent
Two slow-step polymerase enzyme systems and methods
Keith Bjornson,Harold Lee,Jonas Korlach,Stephen Turner,Arek Bibillo,Fred Christians,Robin Emig,Molly He,Insil Park,Lei Jia,Andrei Fedorov,John Lyle +11 more
TL;DR: In this article, two slow step systems can be produced by selecting the appropriate polymerase enzyme, reaction conditions including cofactors, and polymerase reaction substrates including the primed template and nucleotides.
Patent
Classification of nucleic acid templates
Benjamin Flusberg,Jonas Korlach,Jeffrey Wegener,Tyson A. Clark,Igor D. Vilfan,Andrey Kislyuk,Stephen Turner,Jon M. Sorenson,Kevin Travers,Cheryl Heiner,Austin B. Tomaney,Patrick Marks,Jessica Lee,Lei Jia,Dale R. Webster,John Lyle,Jeremiah Hanes,Joseph D. Puglisi +17 more
TL;DR: In this article, single molecule sequencing methods are provided for identification of modified nucleotides within nucleic acid sequences. But these methods are not suitable for the characterization of nucleic acids.