Showing papers by "Jonathan B. Losos published in 2011"

Convergence, adaptation, and constraint

Abstract: Convergent evolution of similar phenotypic features in similar environmental contexts has long been taken as evidence of adaptation. Nonetheless, recent conceptual and empirical developments in many fields have led to a proliferation of ideas about the relationship between convergence and adaptation. Despite criticism from some systematically minded biologists, I reaffirm that convergence in taxa occupying similar selective environments often is the result of natural selection. However, convergent evolution of a trait in a particular environment can occur for reasons other than selection on that trait in that environment, and species can respond to similar selective pressures by evolving nonconvergent adaptations. For these reasons, studies of convergence should be coupled with other methods—such as direct measurements of selection or investigations of the functional correlates of trait evolution—to test hypotheses of adaptation. The independent acquisition of similar phenotypes by the same genetic or developmental pathway has been suggested as evidence of constraints on adaptation, a view widely repeated as genomic studies have documented phenotypic convergence resulting from change in the same genes, sometimes even by the same mutation. Contrary to some claims, convergence by changes in the same genes is not necessarily evidence of constraint, but rather suggests hypotheses that can test the relative roles of constraint and selection in directing phenotypic evolution.

The genome of the green anole lizard and a comparative analysis with birds and mammals

Abstract: The evolution of the amniotic egg was one of the great evolutionary innovations in the history of life, freeing vertebrates from an obligatory connection to water and thus permitting the conquest of terrestrial environments 1 . Among amniotes, genome sequences are available for mammals and birds 2–4 , but not for non-avian

The genome of the green anole lizard and a comparative analysis with birds and mammals

Abstract: The evolution of the amniotic egg was one of the great evolutionary innovations in the history of life, freeing vertebrates from an obligatory connection to water and thus permitting the conquest of terrestrial environments 1 . Among amniotes, genome sequences are available for mammals and birds 2–4 , but not for non-avian

Seeing the Forest for the Trees: The Limitations of Phylogenies in Comparative Biology

Abstract: The past 30 years have seen a revolution in comparative biology. Before that time, systematics was not at the forefront of the biological sciences, and few scientists considered phylogenetic relationships when investigating evolutionary questions. By contrast, systematic biology is now one of the most vigorous disciplines in biology, and the use of phylogenies not only is requisite in macroevolutionary studies but also has been applied to a wide range of topics and fields that no one could possibly have envisioned 30 years ago. My message is simple: phylogenies are fundamental to comparative biology, but they are not the be-all and end-all. Phylogenies are powerful tools for understanding the past, but like any tool, they have their limitations. In addition, phylogenies are much more informative about pattern than they are about process. The best way to fully understand the past—both pattern and process—is to integrate phylogenies with other types of historical data as well as with direct studies ...

Evolution of extreme body size disparity in monitor lizards (varanus)

Abstract: within clades. In this study, we examined size evolution in monitor lizards (Varanus), a clade that includes the largest extant lizard species, the Komodo dragon (V. komodoensis), as well as diminutive species that are nearly four orders of magnitude smaller in adult body mass. We demonstrate that the remarkable body size disparity of this clade is a consequence of different selective demands imposed by three major habitat use patterns—arboreality, terrestriality, and rock-dwelling. We reconstructed phylogenetic relationships and ancestral habitat use and applied model selection to determine that the best-fitting evolutionary models for species’ adult size are those that infer oppositely directed adaptive evolution associated with terrestriality and rockdwelling, with terrestrial lineages evolving extremely large size and rock-dwellers becoming very small. We also show that habitat use affects the evolution of several ecologically important morphological traits independently of body size divergence. These results suggest that habitat use exerts a strong, multidimensional influence on the evolution of morphological size and shape disparity in monitor lizards.

Convergent evolution of phenotypic integration and its alignment with morphological diversification in Caribbean Anolis ecomorphs.

Abstract: The adaptive landscape and the G-matrix are keys concepts for understanding how quantitative characters evolve during adaptive radiation. In particular, whether the adaptive landscape can drive convergence of phenotypic integration (i.e., the pattern of phenotypic variation and covariation summarized in the P-matrix) is not well studied. We estimated and compared P for 19 morphological traits in eight species of Caribbean Anolis lizards, finding that similarity in P among species was not correlated with phylogenetic distance. However, greater similarity in P among ecologically similar Anolis species (i.e., the trunk-ground ecomorph) suggests the role of convergent natural selection. Despite this convergence and relatively deep phylogenetic divergence, a large portion of eigenstructure of P is retained among our eight focal species. We also analyzed P as an approximation of G to test for correspondence with the pattern of phenotypic divergence in 21 Caribbean Anolis species. These patterns of covariation were coincident, suggesting that either genetic constraint has influenced the pattern of among-species divergence or, alternatively, that the adaptive landscape has influenced both G and the pattern of phenotypic divergence among species. We provide evidence for convergent evolution of phenotypic integration for one class of Anolis ecomorph, revealing yet another important dimension of evolutionary convergence in this group.

Shake Rattle and Roll: The Bony Labyrinth and Aerial Descent in Squamates

Abstract: Controlled aerial descent has evolved many times independently in vertebrates. Squamates (lizards and snakes) are unusual in that respect due to the large number of independent origins of the evolution of this behavior. Although some squamates such as flying geckos of the genus Ptychozoon and the flying dragons of the genus Draco show obvious adaptations including skin flaps or enlarged ribs allowing them to increase their surface area and slow down their descent, many others appear unspecialized. Yet, specializations can be expected at the level of the sensory and neural systems allowing animals to maintain stability during controlled aerial descent. The vestibular system is a likely candidate given that it is an acceleration detector and is well-suited to detect changes in pitch, roll and yaw. Here we use conventional and synchrotron μCT scans to quantify the morphology of the vestibular system in squamates able to perform controlled aerial descent compared to species characterized by a terrestrial or climbing life style. Our results show the presence of a strong phylogenetic signal in the data with the vestibular system in species from the same family being morphologically similar. However, both our shape analysis and an analysis of the dimensions of the vestibular system showed clear differences among animals with different life-styles. Species able to perform a controlled aerial descent differed in the position and shape of the inner ear, especially of the posterior ampulla. Given the limited stability of squamates against roll and the fact that the posterior ampulla is tuned to changes in roll this suggests an adaptive evolution of the vestibular system in squamates using controlled aerial descent. Future studies testing for similar differences in other groups of vertebrates known to use controlled aerial descent are needed to test the generality of this observation.

Evolutionary assembly of island faunas reverses the classic island–mainland richness difference in Anolis lizards

Abstract: Aim Islands are widely considered to be species depauperate relative to mainlands but, somewhat paradoxically, are also host to many striking adaptive radiations. Here, focusing on Anolis lizards, we investigate if cladogenetic processes can reconcile these observations by determining if in situ speciation can reduce, or even reverse, the classical island-mainland richness discrepancy. Location Caribbean islands and the Neotropical mainland. Methods We constructed range maps for 203 mainland anoles from museum records and evaluated whether geographical area could account for differences in species richness between island and mainland anole faunas. We compared the island species-area relationship with total mainland anole diversity and with the richness of island-sized mainland areas. We evaluated the role of climate in the observed differences by using Bayesian model averaging to predict island richness based on the mainland climate-richness relationship. Lastly, we used a published phylogeny and stochastic mapping of ancestral states to determine if speciation rate was greater on islands, after accounting for differences in geographical area. Results Islands dominated by in situ speciation had, on average, significantly more species than similarly sized mainland regions, but islands where in situ speciation has not occurred were species depauperate relative to mainland areas. Results were similar at the scale of the entire mainland, although marginally non-significant. These findings held even after accounting for climate. Speciation has not been faster on islands; instead, when extinction was assumed to be low, speciation rate varied consistently with geographical area. When extinction was high, there was some evidence that mainland speciation was faster than expected based on area. Main conclusions Our results indicate that evolutionary assembly of island faunas can reverse the general pattern of reduced species richness on islands relative to mainlands.

Developing A Community-based Genetic Nomenclature for Anole Lizards

Abstract: Background: Comparative studies of amniotes have been hindered by a dearth of reptilian molecular sequences. With the genomic assembly of the green anole, Anolis carolinensis available, non-avian reptilian genes can now be compared to mammalian, avian, and amphibian homologs. Furthermore, with more than 350 extant species in the genus Anolis, anoles are an unparalleled example of tetrapod genetic diversity and divergence. As an important ecological, genetic and now genomic reference, it is imperative to develop a standardized Anolis gene nomenclature alongside associated vocabularies and other useful metrics. Results: Here we report the formation of the Anolis Gene Nomenclature Committee (AGNC) and propose a standardized evolutionary characterization code that will help researchers to define gene orthology and paralogy with tetrapod homologs, provide a system for naming novel genes in Anolis and other reptiles, furnish abbreviations to facilitate comparative studies among the Anolis species and related iguanid squamates, and classify the geographical origins of Anolis subpopulations. Conclusions: This report has been generated in close consultation with members of the Anolis and genomic research communities, and using public database resources including NCBI and Ensembl. Updates will continue to be regularly posted to new research community websites such as lizardbase. We anticipate that this standardized gene nomenclature will facilitate the accessibility of reptilian sequences for comparative studies among tetrapods and will further serve as a template for other communities in their sequencing and annotation initiatives.

Competition, predation and natural selection in island lizards.

Abstract: Arising from R. Calsbeek & R. M. Cox , 613–616 (2010)10.1038/nature09020 ; Calsbeek and Cox reply Discerning the relative influence of competition and predation as selective forces is an important goal of evolutionary ecology. Calsbeek and Cox1 argue that intraspecific competition outweighs predation as an agent of natural selection on island populations of the lizard Anolis sagrei. However, we identify several problems with the design and analysis of the Calsbeek and Cox1 study that we believe render its results uninterpretable.

An Ecomorphological Analysis of Native and Introduced Populations of the Endemic Lizard Anolis maynardi of the Cayman Islands

Abstract: Anolis maynardi is an endemic anole from Little Cayman (Cayman Islands) that is characterized by an extremely elongated rostrum in males. In the 1980s, this species was discovered on the nearby island of Cayman Brac where it was likely introduced. Despite its unusual morphology and endemic status, little is known about the abundance, ecology, or natural history of this species. Our data suggest that animals from the two islands are distinct in their morphology, performance, and ecology: Cayman Brac lizards utilize more open habitats, have relatively longer limbs and shorter heads, but higher bite forces on average. Moreover, a distinct sexual dimorphism is present in both populations in which males have relatively larger heads and longer limbs than females.

Nothing in Biology Makes Sense Except in the Light of Evolution: Pattern, Process, and the Evidence

Abstract: Evolutionary biology is unusual: unlike any other science, evolutionary biologists study a phenomenon that some people do not think exists. Consider chemistry, for example; it is unlikely that anyone does not believe in the existence of chemical reactions. Ditto for the laws of physics. Even within biology, no one believes that cells do not exist nor that DNA is a fraud. But public opinion polls consistently show that a majority of the American public is either unsure about or does not believe that life has evolved through time. For example, a Gallup poll taken repeatedly over the past twenty years indicates that as much as 40 percent of the population believes that the Bible is literally correct. When I teach evolutionary biology, I focus on the ideas about how evolution works, rather than on the empirical record of how species have changed through time. However, for one lecture period I make an exception, and in some respects I consider this the most important lecture of the semester. Sad as I fi nd it to be, most of my students will not go on to become evolutionary biologists. Rather, they will become leaders in many diverse aspects of society: doctors, lawyers, businesspeople, clergy, and artists; people to whom others will look for guidance on matters of knowledge and science. For this reason, although I devote my course to a detailed understanding of the evolutionary pro cess, I consider it vitally important that my students understand why it is that almost all biologists fi nd the evidence that evolution has occurred— and continues to occur— to be overwhelming. If students take nothing else from my course, I want them to understand