Jonathan B. Losos

Bio: Jonathan B. Losos is an academic researcher from Washington University in St. Louis. The author has contributed to research in topics: Anolis & Adaptive radiation. The author has an hindex of 89, co-authored 274 publications receiving 28673 citations. Previous affiliations of Jonathan B. Losos include University of California, Davis & Avila University.

Adaptation and constraint in the evolution of specialization of bahamian anolis lizards

Abstract: Interspecific interactions affect habitat use and subsequent morphological adaptation in Anolis lizards. We examined populations of two species of Anolis lizards that evolved in the species-rich communities of Cuba and are now widespread in the Bahamas. Because the species occupy islands in the Bahamas that vary in the number of lizard species present and other characteristics, we predicted that directional selection should have led to morphological differentiation. In particular, we expected that populations on one-species islands should have evolved toward a generalist morphology because of the lack of competitors. Divergence in both species has been adaptive; populations that use wider perches have longer legs. Nonetheless, these differences are relatively minor, and none of the populations appears to have differentiated from its ancestral "ecomorph" type toward a more generalized morphology. This stasis mirrors a trend observed in the radiation of Caribbean anoles, which exhibits repeated instances of evolutionary specialization, but few or no cases of reversion to a more generalized condition. The explanation for this directionality of evolution is not obvious but probably involves the tendency of specialized species to continue using and further adapting the niches for which they are specialized even as conditions change.

Roles for modularity and constraint in the evolution of cranial diversity among Anolis lizards.

Abstract: Complex organismal structures are organized into modules, suites of traits that develop, function, and vary in a coordinated fashion By limiting or directing covariation among component traits, modules are expected to represent evolutionary building blocks and to play an important role in morphological diversification But how stable are patterns of modularity over macroevolutionary timescales? Comparative analyses are needed to address the macroevolutionary effect of modularity, but to date few have been conducted We describe patterns of skull diversity and modularity in Caribbean Anolis lizards We first diagnose the primary axes of variation in skull shape and then examine whether diversification of skull shape is concentrated to changes within modules or whether changes arose across the structure as a whole We find no support for the hypothesis that cranial modules are conserved as species diversify in overall skull shape Instead we find that anole skull shape and modularity patterns independently converge In anoles, skull modularity is evolutionarily labile and may reflect the functional demands of unique skull shapes Our results suggest that constraints have played little role in limiting or directing the diversification of head shape in Anolis lizards

The role of geography and ecological opportunity in the diversification of day geckos (Phelsuma).

Abstract: We examine the effects of ecological opportunity and geographic area on rates of species accumulation and morphological evolution following archipelago colonization in day geckos (genus Phelsuma) in the Indian Ocean. Using a newly generated molecular phylogeny for the genus, we present evidence that these geckos likely originated on Madagascar, whereas colonization of three archipelagos in the Indian Ocean, the Seychelles, Mascarene, and Comoros Islands has produced three independent monophyletic radiations. We find that rates of species accumulation are not elevated following colonization but are roughly equivalent on all three isolated archipelagos and on the larger island of Madagascar. However, rates of species accumulation have slowed through time on Madagascar. Rates of morphological evolution are higher in both the Mascarene and Seychelles archipelagos compared to rates on Madagascar. This negative relationship between rate of morphological evolution and island area suggests that ecological opportunity is an important factor in diversification of day gecko species.

Habitat use and ecological interactions of an introduced and a native species of Anolis lizard on Grand Cayman, with a review of the outcomes of anole introductions

Abstract: Since its introduction ten years ago, Anolis sagrei has spread over much of Grand Cayman and is now more common in some habitats than the native anole, A. conspersus. Interspecific differences in body size, perch height, and microclimatic preference may have facilitated the colonization. Nonetheless, competition may be occurring between the species; comparisons with studies of habitat use prior to the arrival of A. sagrei indicate that in open habitats, where A. sagrei is now abundant, A. conspersus perches higher, but in closed habitats, where A. sagrei is absent, no change in perch height is evident. Review of data concerning 23 Anolis introductions indicates that the presence or absence of an ecologically similar native species may be an important determinant of colonization success or failure.

A Comparative Study of Population Density and Sexual Size Dimorphism in Lizards

Abstract: Two hypotheses predict a positive relationship between population density and sex- ual size dimorphism (SSD) among species of Anolis lizards; these hypotheses focus on food competition and male-male competition for breeding territories, respectively. We first tested an underlying assumption of the food competition hypothesis, using data on the prey consumed by Anolis aeneus. This assumption is that SSD reduces intersexual food competition relative to the amount of competition expected if males and females are the same size. Contrary to this assumption, estimates of food competition were lower if males and females were the same size than if males were larger than females or vice versa. Next, we tested the prediction from both hypotheses that SSD should be positively related to female density, using data from 25 taxa (24 species) of anoles. Statistically significant relationships between these two variables were ob- tained in the vast majority of potentially correct phylogenies for the species in this data set, based on either a gradual or a speciational model of evolution. In addition to documenting a relationship between SSD and density, this study shows how comparative questions can be pursued in taxa that currently lack a definitive phylogeny.

疟原虫var基因转换速率变化导致抗原变异[英]／Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

Abstract: 抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1（PfPMP1）与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用，在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员，通过启动转录不同的var基因变异体为抗原变异提供了分子基础。

The Theory of Island Biogeography

Abstract: Preface to the Princeton Landmarks in Biology Edition vii Preface xi Symbols Used xiii 1. The Importance of Islands 3 2. Area and Number of Speicies 8 3. Further Explanations of the Area-Diversity Pattern 19 4. The Strategy of Colonization 68 5. Invasibility and the Variable Niche 94 6. Stepping Stones and Biotic Exchange 123 7. Evolutionary Changes Following Colonization 145 8. Prospect 181 Glossary 185 References 193 Index 201

Human biochemical genetics

Abstract: So far in this course we have dealt entirely with the evolution of characters that are controlled by simple Mendelian inheritance at a single locus. There are notes on the course website about gametic disequilibrium and how allele frequencies change at two loci simultaneously, but we didn’t discuss them. In every example we’ve considered we’ve imagined that we could understand something about evolution by examining the evolution of a single gene. That’s the domain of classical population genetics. For the next few weeks we’re going to be exploring a field that’s actually older than classical population genetics, although the approach we’ll be taking to it involves the use of population genetic machinery. If you know a little about the history of evolutionary biology, you may know that after the rediscovery of Mendel’s work in 1900 there was a heated debate between the “biometricians” (e.g., Galton and Pearson) and the “Mendelians” (e.g., de Vries, Correns, Bateson, and Morgan). Biometricians asserted that the really important variation in evolution didn’t follow Mendelian rules. Height, weight, skin color, and similar traits seemed to

phytools: an R package for phylogenetic comparative biology (and other things)

Abstract: Summary 1. Here, I present a new, multifunctional phylogenetics package, phytools, for the R statistical computing environment. 2. The focus of the package is on methods for phylogenetic comparative biology; however, it also includes tools for tree inference, phylogeny input/output, plotting, manipulation and several other tasks. 3. I describe and tabulate the major methods implemented in phytools, and in addition provide some demonstration of its use in the form of two illustrative examples. 4. Finally, I conclude by briefly describing an active web-log that I use to document present and future developments for phytools. I also note other web resources for phylogenetics in the R computational environment.

Testing for phylogenetic signal in comparative data: behavioral traits are more labile.

Abstract: The primary rationale for the use of phylogenetically based statistical methods is that phylogenetic signal, the tendency for related species to resemble each other, is ubiquitous. Whether this assertion is true for a given trait in a given lineage is an empirical question, but general tools for detecting and quantifying phylogenetic signal are inadequately developed. We present new methods for continuous-valued characters that can be implemented with either phylogenetically independent contrasts or generalized least-squares models. First, a simple randomization procedure allows one to test the null hypothesis of no pattern of similarity among relatives. The test demonstrates correct Type I error rate at a nominal α = 0.05 and good power (0.8) for simulated datasets with 20 or more species. Second, we derive a descriptive statistic, K, which allows valid comparisons of the amount of phylogenetic signal across traits and trees. Third, we provide two biologically motivated branch-length transformat...