Jonathan B. Losos

Bio: Jonathan B. Losos is an academic researcher from Washington University in St. Louis. The author has contributed to research in topics: Anolis & Adaptive radiation. The author has an hindex of 89, co-authored 274 publications receiving 28673 citations. Previous affiliations of Jonathan B. Losos include University of California, Davis & Avila University.

The evolution of species recognition signals.

Abstract: ‘Sibling species’, an old term that has fallen out of use, refers to closely related species that are so similar that it is hard to tell them apart. The existence of such species raises the obvious question: How do the animals themselves tell one another apart? And indeed, this is an active area of research (Tibbetts & Dale 2007; Uy et al. 2009). Usually, the species differ in one or more traits (i.e. species recognition signals) detectable with the sensory modalities upon which they rely (e.g. raptors use visual signals, frogs use sound and electric fish use different patterns of electric discharge). A more general question concerns how such differences evolve. Over the last decade, it has become increasingly evident that mating signals can evolve under simultaneous selection for two functions (Fleishman et al. 2009): (i) eliciting attention (i.e. detectability); and (ii) species identification (i.e. distinguishing conspecifics from non-conspecifics). Historically, species recognition has attracted a significant amount of research from evolutionary biologists based on the assumption that if hybrids suffer reduced fitness or cannot be produced at all, then natural selection should favour individuals bearing traits that prevent such matings. This idea—confusingly termed either reinforcement or reproductive character displacement—had a rocky time in the evolutionary literature for many years, though now it is widely accepted (Servedio & Noor 2003; Rundle and Nosil, 2005; Pfennig & Pfennig 2009). Near the dawn of the era of molecular ecology, one of the first studies to employ molecular tools to study the evolution of species recognition signals was Webster & Burns’ (1973) study of the evolution of dewlap colour in Anolis lizards. Anoles possess a retractable flap of skin under the throat, termed as dewlap, that is used in courtship, aggressive interactions and even encounters with predators (reviewed in Losos 2009). Anoles can be found in communities of as many as 15 species, and sympatric species never have identical dewlaps, leading to the hypothesis that the dewlap is used in species identification (Rand & Williams 1970). Webster and Burns studied a highly unusual pattern of dewlap distribution in the Hispaniolan bark anole, Anolis brevirostris, along a transect on the western coast of Haiti (Fig. 1). Starting in the south, the lizards have a white dewlap. Then, abruptly the dewlaps become intensely orange; moving northwards, the intensity and size of the orange spot diminishes until it has almost disappeared, whereupon again there is an abrupt transition back to intense orange coloration that characterizes the northernmost populations. Using the tools of the day, Webster and Burns employed starch-gel electrophoresis to examine six geographically varying protein loci. Analysis of these data yielded three important discoveries. First, the populations sorted into three groups: the white-dewlapped forms in the south, the orange-dewlapped forms in the north and a third, intervening form that exhibited clinal variation in the proportion of white vs. orange in the dewlap. Second, at the point of contact between the groups in both the north and the south, adjacent populations did not share alleles at several loci. Third, within the middle, clinally varying group, populations showed little genetic differentiation despite the differences in dewlap colour among populations. Webster and Burns concluded that they were dealing not with a single species, but three—subsequently, the middle populations were described as A. caudalis and the northern ones as A. websteri. More importantly, what had seemingly been an incoherent pattern of geographic variation in dewlap colour variation now had a clear explanation. The apposition of orange vs. white at both ends of A. caudalis’s range is most parsimoniously explained as the result of selection for differences in species recognition signals in sympatry. The fact that A. caudalis maintains the clinal variation in the face of possibly strong ongoing gene flow, as evidenced by the lack of genetic differentiation among populations, was interpreted as powerful evidence for ongoing natural selection favouring dewlap colour differences at the contact zones with the other species. Given this provocative pattern and the great interest in evolutionary reinforcement, it is surprising that this example has not been subject to further investigation as molecular tools have developed over the past four decades. Undoubtedly, the transect’s occurrence in Haiti, a notoriously difficult place for fieldwork, has been a factor. Finally, however, this case study has come under further scrutiny. On a trip in Haiti that was no doubt a story in itself, Lambert et al. revisited Webster and Burns’ transect Correspondence: Jonathan B. Losos, Fax: 617 496 9026; E-mail: jlosos@oeb.harvard.edu

Dewlap colour variation in Anolis sagrei is maintained among habitats within islands of the West Indies

Abstract: Animal signals evolve in an ecological context. Locally adapting animal sexual signals can be especially important for initiating or reinforcing reproductive isolation during the early stages of speciation. Previous studies have demonstrated that dewlap colour in Anolis lizards can be highly variable between populations in relation to both biotic and abiotic adaptive drivers at relatively large geographical scales. Here, we investigated differentiation of dewlap coloration among habitat types at a small spatial scale, within multiple islands of the West Indies, to test the hypothesis that similar local adaptive processes occur over smaller spatial scales. We explored variation in dewlap coloration in the most widespread species of anole, Anolis sagrei, across three characteristic habitats spanning the Bahamas and the Cayman Islands, namely beach scrub, primary coppice forest and mangrove forest. Using reflectance spectrometry paired with supervised machine learning, we found significant differences in spectral properties of the dewlap between habitats within small islands, sometimes over very short distances. Passive divergence in dewlap phenotype associated with isolation‐by‐distance did not seem to explain our results. On the other hand, these habitat‐specific dewlap differences varied in magnitude and direction across islands, and thus, our primary test for adaptation—parallel responses across islands—was not supported. We suggest that neutral processes or selection could be involved in several ways, including sexual selection. Our results shed new light on the scale at which signal colour polymorphism can be maintained in the presence of gene flow, and the relative role of local adaptation and other processes in driving these patterns of dewlap colour variation across islands.

Deadly cats down under

Abstract: The debate over the extent to which cats are an ecological problem and, if so, what solutions to pursue has become increasingly nasty. Underlying this unpleasantness has been a lack of enough good information. But there is a place where scientists do know, where research on cats and their impact and possible solutions has been deep and broad. That place is Australia, and two new books pro­vide insightful analysis of what we have learned and what can be done.

疟原虫var基因转换速率变化导致抗原变异[英]／Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

Abstract: 抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1（PfPMP1）与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用，在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员，通过启动转录不同的var基因变异体为抗原变异提供了分子基础。

The Theory of Island Biogeography

Abstract: Preface to the Princeton Landmarks in Biology Edition vii Preface xi Symbols Used xiii 1. The Importance of Islands 3 2. Area and Number of Speicies 8 3. Further Explanations of the Area-Diversity Pattern 19 4. The Strategy of Colonization 68 5. Invasibility and the Variable Niche 94 6. Stepping Stones and Biotic Exchange 123 7. Evolutionary Changes Following Colonization 145 8. Prospect 181 Glossary 185 References 193 Index 201

Human biochemical genetics

Abstract: So far in this course we have dealt entirely with the evolution of characters that are controlled by simple Mendelian inheritance at a single locus. There are notes on the course website about gametic disequilibrium and how allele frequencies change at two loci simultaneously, but we didn’t discuss them. In every example we’ve considered we’ve imagined that we could understand something about evolution by examining the evolution of a single gene. That’s the domain of classical population genetics. For the next few weeks we’re going to be exploring a field that’s actually older than classical population genetics, although the approach we’ll be taking to it involves the use of population genetic machinery. If you know a little about the history of evolutionary biology, you may know that after the rediscovery of Mendel’s work in 1900 there was a heated debate between the “biometricians” (e.g., Galton and Pearson) and the “Mendelians” (e.g., de Vries, Correns, Bateson, and Morgan). Biometricians asserted that the really important variation in evolution didn’t follow Mendelian rules. Height, weight, skin color, and similar traits seemed to

phytools: an R package for phylogenetic comparative biology (and other things)

Abstract: Summary 1. Here, I present a new, multifunctional phylogenetics package, phytools, for the R statistical computing environment. 2. The focus of the package is on methods for phylogenetic comparative biology; however, it also includes tools for tree inference, phylogeny input/output, plotting, manipulation and several other tasks. 3. I describe and tabulate the major methods implemented in phytools, and in addition provide some demonstration of its use in the form of two illustrative examples. 4. Finally, I conclude by briefly describing an active web-log that I use to document present and future developments for phytools. I also note other web resources for phylogenetics in the R computational environment.

Testing for phylogenetic signal in comparative data: behavioral traits are more labile.

Abstract: The primary rationale for the use of phylogenetically based statistical methods is that phylogenetic signal, the tendency for related species to resemble each other, is ubiquitous. Whether this assertion is true for a given trait in a given lineage is an empirical question, but general tools for detecting and quantifying phylogenetic signal are inadequately developed. We present new methods for continuous-valued characters that can be implemented with either phylogenetically independent contrasts or generalized least-squares models. First, a simple randomization procedure allows one to test the null hypothesis of no pattern of similarity among relatives. The test demonstrates correct Type I error rate at a nominal α = 0.05 and good power (0.8) for simulated datasets with 20 or more species. Second, we derive a descriptive statistic, K, which allows valid comparisons of the amount of phylogenetic signal across traits and trees. Third, we provide two biologically motivated branch-length transformat...