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José N. Onuchic

Researcher at Rice University

Publications -  456
Citations -  42946

José N. Onuchic is an academic researcher from Rice University. The author has contributed to research in topics: Protein folding & Energy landscape. The author has an hindex of 99, co-authored 426 publications receiving 38621 citations. Previous affiliations of José N. Onuchic include University of São Paulo & University of Texas MD Anderson Cancer Center.

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Funnels, pathways, and the energy landscape of protein folding: A synthesis

TL;DR: The work unifies several previously proposed ideas concerning the mechanism protein folding and delimits the regions of validity of these ideas under different thermodynamic conditions.
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THEORY OF PROTEIN FOLDING: The Energy Landscape Perspective

TL;DR: The energy landscape theory of protein folding suggests that the most realistic model of a protein is a minimally frustrated heteropolymer with a rugged funnel-like landscape biased toward the native structure.
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Direct-coupling analysis of residue coevolution captures native contacts across many protein families

TL;DR: The findings suggest that contacts predicted by DCA can be used as a reliable guide to facilitate computational predictions of alternative protein conformations, protein complex formation, and even the de novo prediction of protein domain structures, contingent on the existence of a large number of homologous sequences which are being rapidly made available due to advances in genome sequencing.
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Theory of protein folding.

TL;DR: This work states that proteins have a rugged funnel-like landscape biased toward the native structure as a result of evolution, and connecting theory and simulations of minimalist models with experiments has completely revolutionized the understanding of the underlying mechanisms that control protein folding.
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Topological and energetic factors: what determines the structural details of the transition state ensemble and "en-route" intermediates for protein folding? An investigation for small globular proteins

TL;DR: In this article, the authors investigated the role of topology in the transition state ensembles of small globular proteins and showed that topology plays a central role in determining the folding mechanism.