J
José Paulo Sampaio
Researcher at Universidade Nova de Lisboa
Publications - 148
Citations - 7963
José Paulo Sampaio is an academic researcher from Universidade Nova de Lisboa. The author has contributed to research in topics: Clamp connection & Rhodotorula. The author has an hindex of 38, co-authored 141 publications receiving 7045 citations. Previous affiliations of José Paulo Sampaio include Nova Southeastern University & National Institute of Statistics and Geography.
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Journal ArticleDOI
A higher-level phylogenetic classification of the Fungi
David S. Hibbett,Manfred Binder,Joseph F. Bischoff,Meredith Blackwell,Paul F. Cannon,Ove E. Eriksson,Sabine M. Huhndorf,Timothy Y. James,Paul M. Kirk,Robert Lücking,H. Thorsten Lumbsch,François Lutzoni,P. Brandon Matheny,David J. McLaughlin,Martha J. Powell,Scott A. Redhead,Conrad L. Schoch,Joseph W. Spatafora,Joost A. Stalpers,Rytas Vilgalys,M. Catherine Aime,André Aptroot,Robert Bauer,Dominik Begerow,Gerald L. Benny,Lisa A. Castlebury,Pedro W. Crous,Yu-Cheng Dai,Walter Gams,David M. Geiser,Gareth W. Griffith,Cécile Gueidan,David L. Hawksworth,Geir Hestmark,Kentaro Hosaka,Richard A. Humber,Kevin D. Hyde,Joseph E. Ironside,Urmas Kõljalg,Cletus P. Kurtzman,Karl-Henrik Larsson,Robert W. Lichtwardt,Joyce E. Longcore,Jolanta Miadlikowska,Andrew N. Miller,Jean-Marc Moncalvo,Sharon E. Mozley-Standridge,Franz Oberwinkler,Erast Parmasto,Valérie Reeb,Jack D. Rogers,Claude Roux,Leif Ryvarden,José Paulo Sampaio,Arthur Schüssler,Junta Sugiyama,R. Greg Thorn,Leif Tibell,Wendy A. Untereiner,Christopher Walker,Zheng Wang,Alex Weir,Michael Weiss,Merlin M. White,Katarina Winka,Yi-Jian Yao,Ning Zhang +66 more
TL;DR: A comprehensive phylogenetic classification of the kingdom Fungi is proposed, with reference to recent molecular phylogenetic analyses, and with input from diverse members of the fungal taxonomic community.
Journal ArticleDOI
Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast
Diego Libkind,Chris Todd Hittinger,Elisabete Valério,Carla Gonçalves,Jim Dover,Mark Johnston,Paula Gonçalves,José Paulo Sampaio +7 more
TL;DR: This study shows that combining microbial ecology with comparative genomics facilitates the discovery and preservation of wild genetic stocks of domesticated microbes to trace their history, identify genetic changes, and suggest paths to further industrial improvement.
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Natural populations of Saccharomyces kudriavzevii in Portugal are associated with oak bark and are sympatric with S. cerevisiae and S. paradoxus
TL;DR: It is suggested that (markedly) different growth temperature preferences play a fundamental role in the sympatric associations of Saccharomyces species uncovered in this survey, and S. kudriavzevii stands out as the species that copes better with low temperatures.
Journal ArticleDOI
A Gondwanan imprint on global diversity and domestication of wine and cider yeast Saccharomyces uvarum
Pedro Almeida,Carla Gonçalves,Sara Teixeira,Diego Libkind,Martin Bontrager,Isabelle Masneuf-Pomarède,Warren Albertin,Pascal Durrens,David James Sherman,Philippe Marullo,Chris Todd Hittinger,Paula Gonçalves,José Paulo Sampaio +12 more
TL;DR: A population genomics approach uses a collection of isolates obtained from fermented beverages and from natural environments on five continents to investigate the global phylogeography and domestication fingerprints of Saccharomyces cerevisiae.
Journal ArticleDOI
Distinct Domestication Trajectories in Top-Fermenting Beer Yeasts and Wine Yeasts.
Margarida Gonçalves,Ana Pontes,Pedro Almeida,Raquel Barbosa,Marta Serra,Diego Libkind,Mathias Hutzler,Paula Gonçalves,José Paulo Sampaio +8 more
TL;DR: The results revealed that top-fermenting beer yeasts are polyphyletic, with a main clade composed of at least three subgroups, dominantly represented by the German, British, and wheat beer strains.