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K.-J. Cheng

Bio: K.-J. Cheng is an academic researcher from Rowett Research Institute. The author has contributed to research in topics: Rumen & Bacteria. The author has an hindex of 16, co-authored 24 publications receiving 6560 citations.

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1,425 citations

Journal ArticleDOI
TL;DR: This chapter discusses the role of the Bacterial Glycocalyx in Populations on Inert Surfaces, as well as its role in cell reprograming, and the importance of knowing the phytochemical properties of the substance.
Abstract: INTRODUCTION . THE NATURE OF THE BACTERIAL GLYCOCALYX . Definition of the Bacterial Glycocalyx . .. The Physical Nature of the Bacterial Glycocalyx . .. The Chemical Nature of the Bacterial Glycocalyx. .. The Loss of the Bacterial Glycocalyx in vitro . .. THE BACTERIAL GLYCOCALYX IN NATURAL ECOSySTEMS . The Bacterial Glycocalyx in Populations on Inert Surfaces. .. The Bacterial Glycoca/yx in Populations on Tissue Surfaces . ..

1,047 citations

Journal ArticleDOI
TL;DR: The chemical and physical nature of these bacterial surface components that mediate pathogenic adhesion and counteract host defense mechanisms sufficiently to allow infections to become established are discussed.
Abstract: Modern research has revealed that the true surfaces of animal cells consist of polysaccharide chains that are linked to proteins hydrophobically anchored in the membrane and protrude to form a dense glycocalyx. It has become increasingly clear that most pathogenic bacteria must position themselves at the surface of their "target" cell in order to exert their toxic or otherwise deleterious effects. The true surface of most pathogenic bacteria has also been recently shown to consist of a protruding mass of polysaccharide chains--the bacterial glycocalyx--that is composed of teichoic acids in many gram-positive species and of acid polysaccharides in many gram-negative organisms. Through this bacterial glycocalyx certain cell surface proteins and organized protein structures (e.g., pili) are known to project, so that the bacterial surface is a mosaic of polysaccharides and proteins; both of these types of molecules have been implicated in instances of specific pathogenic adhesion. Besides their role in specific adhesion to target cells, these surface components interpose a highly charged, and often very extensive, barrier that can prevent the penetration of antibodies and antibiotics to their target sites in the bacterial cell. They may also frustrate mucociliary clearance, phagocytosis, and other clearance mechanisms of the host. We will discuss the chemical and physical nature of these bacterial surface components that mediate pathogenic adhesion and counteract host defense mechanisms sufficiently to allow infections to become established.

211 citations

Journal ArticleDOI
TL;DR: In this article, the importance of urease to bacteria is discussed, identifying the gastrointestinal tract as a major reservoir of Ureolytic bacteria and investigating the urinary tract environment and the infectious struvite stone production that often accompanies Urease-producing bacteria there.
Abstract: Urease activity is a physiological function of many bacteria that enables these organisms to utilize urea as a source of nitrogen. The association of ureolytic bacteria with human or animal hosts varies widely from a commensal relationship as demonstrated with skin microflora, a symbiotic relationship in the gastrointestinal tract, to a pathogenic relationship in the urinary tract. Since similar or identical species of bacteria such as Staphylococcus aureus are found in all three environments, the effect of urease activity on the host must be solely a function of the environment of these organisms. In this review, the importance of urease to bacteria is discussed, identifying the gastrointestinal tract as a major reservoir of ureolytic bacteria and investigating the urinary tract environment and the infectious struvite stone production that often accompanies urease-producing bacteria there. Finally, an infection model is presented which explains the development and growth of these urinary calculi and their remarkable persistence in spite of modern urological treatments.

149 citations


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21 May 1999-Science
TL;DR: Improvements in understanding of the genetic and molecular basis of bacterial community behavior point to therapeutic targets that may provide a means for the control of biofilm infections.
Abstract: Bacteria that attach to surfaces aggregate in a hydrated polymeric matrix of their own synthesis to form biofilms. Formation of these sessile communities and their inherent resistance to antimicrobial agents are at the root of many persistent and chronic bacterial infections. Studies of biofilms have revealed differentiated, structured groups of cells with community properties. Recent advances in our understanding of the genetic and molecular basis of bacterial community behavior point to therapeutic targets that may provide a means for the control of biofilm infections.

11,162 citations

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TL;DR: It is evident that biofilm formation is an ancient and integral component of the prokaryotic life cycle, and is a key factor for survival in diverse environments.
Abstract: Biofilms--matrix-enclosed microbial accretions that adhere to biological or non-biological surfaces--represent a significant and incompletely understood mode of growth for bacteria. Biofilm formation appears early in the fossil record (approximately 3.25 billion years ago) and is common throughout a diverse range of organisms in both the Archaea and Bacteria lineages, including the 'living fossils' in the most deeply dividing branches of the phylogenetic tree. It is evident that biofilm formation is an ancient and integral component of the prokaryotic life cycle, and is a key factor for survival in diverse environments. Recent advances show that biofilms are structurally complex, dynamic systems with attributes of both primordial multicellular organisms and multifaceted ecosystems. Biofilm formation represents a protected mode of growth that allows cells to survive in hostile environments and also disperse to colonize new niches. The implications of these survival and propagative mechanisms in the context of both the natural environment and infectious diseases are discussed in this review.

6,170 citations

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TL;DR: It is understood that biofilms are universal, occurring in aquatic and industrial water systems as well as a large number of environments and medical devices relevant for public health, and that treatments may be based on inhibition of genes involved in cell attachment and biofilm formation.
Abstract: Though biofilms were first described by Antonie van Leeuwenhoek, the theory describing the biofilm process was not developed until 1978. We now understand that biofilms are universal, occurring in aquatic and industrial water systems as well as a large number of environments and medical devices relevant for public health. Using tools such as the scanning electron microscope and, more recently, the confocal laser scanning microscope, biofilm researchers now understand that biofilms are not unstructured, homogeneous deposits of cells and accumulated slime, but complex communities of surface-associated cells enclosed in a polymer matrix containing open water channels. Further studies have shown that the biofilm phenotype can be described in terms of the genes expressed by biofilm-associated cells. Microorganisms growing in a biofilm are highly resistant to antimicrobial agents by one or more mechanisms. Biofilm-associated microorganisms have been shown to be associated with several human diseases, such as native valve endocarditis and cystic fibrosis, and to colonize a wide variety of medical devices. Though epidemiologic evidence points to biofilms as a source of several infectious diseases, the exact mechanisms by which biofilm-associated microorganisms elicit disease are poorly understood. Detachment of cells or cell aggregates, production of endotoxin, increased resistance to the host immune system, and provision of a niche for the generation of resistant organisms are all biofilm processes which could initiate the disease process. Effective strategies to prevent or control biofilms on medical devices must take into consideration the unique and tenacious nature of biofilms. Current intervention strategies are designed to prevent initial device colonization, minimize microbial cell attachment to the device, penetrate the biofilm matrix and kill the associated cells, or remove the device from the patient. In the future, treatments may be based on inhibition of genes involved in cell attachment and biofilm formation.

5,748 citations

Journal ArticleDOI
TL;DR: A concluding discussion identifies unresolved issues pertaining to microbial cellulose utilization, suggests approaches by which such issues might be resolved, and contrasts a microbially oriented cellulose hydrolysis paradigm to the more conventional enzymatically oriented paradigm in both fundamental and applied contexts.
Abstract: Fundamental features of microbial cellulose utilization are examined at successively higher levels of aggregation encompassing the structure and composition of cellulosic biomass, taxonomic diversity, cellulase enzyme systems, molecular biology of cellulase enzymes, physiology of cellulolytic microorganisms, ecological aspects of cellulase-degrading communities, and rate-limiting factors in nature. The methodological basis for studying microbial cellulose utilization is considered relative to quantification of cells and enzymes in the presence of solid substrates as well as apparatus and analysis for cellulose-grown continuous cultures. Quantitative description of cellulose hydrolysis is addressed with respect to adsorption of cellulase enzymes, rates of enzymatic hydrolysis, bioenergetics of microbial cellulose utilization, kinetics of microbial cellulose utilization, and contrasting features compared to soluble substrate kinetics. A biological perspective on processing cellulosic biomass is presented, including features of pretreated substrates and alternative process configurations. Organism development is considered for "consolidated bioprocessing" (CBP), in which the production of cellulolytic enzymes, hydrolysis of biomass, and fermentation of resulting sugars to desired products occur in one step. Two organism development strategies for CBP are examined: (i) improve product yield and tolerance in microorganisms able to utilize cellulose, or (ii) express a heterologous system for cellulose hydrolysis and utilization in microorganisms that exhibit high product yield and tolerance. A concluding discussion identifies unresolved issues pertaining to microbial cellulose utilization, suggests approaches by which such issues might be resolved, and contrasts a microbially oriented cellulose hydrolysis paradigm to the more conventional enzymatically oriented paradigm in both fundamental and applied contexts.

4,769 citations

Journal ArticleDOI
TL;DR: The mechanisms of generation and potential impacts of microplastics in the ocean environment are discussed, and the increasing levels of plastic pollution of the oceans are understood, it is important to better understand the impact of microPlastic in the Ocean food web.

4,706 citations