K
Kristi Berry
Researcher at J. Craig Venter Institute
Publications - 9
Citations - 3800
Kristi Berry is an academic researcher from J. Craig Venter Institute. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 5, co-authored 5 publications receiving 3673 citations.
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Journal ArticleDOI
The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000
C. Robin Buell,Vinita Joardar,Magdalen Lindeberg,Jeremy D. Selengut,Ian T. Paulsen,Michelle L. Gwinn,Robert J. Dodson,Robert T. DeBoy,A. Scott Durkin,James F. Kolonay,Ramana Madupu,Sean C. Daugherty,Lauren M. Brinkac,Maureen J. Beanan,Daniel H. Haft,William C. Nelson,Tanja M. Davidsen,Nikhat Zafar,Liwei Zhou,Jia Liu,Qiaoping Yuan,Hoda Khouri,Nadia Fedorova,Bao Tran,Daniel A. Russell,Kristi Berry,Teresa Utterback,Susan Van Aken,Tamara Feldblyum,Mark D'Ascenzo,Wen Ling Deng,Adela R. Ramos,James R. Alfano,Samuel W. Cartinhour,Arun K. Chatterjee,Terrence P. Delaney,Sondra G. Lazarowitz,Gregory B. Martin,David J. Schneider,Xiaoyan Tang,Carol L. Bender,Owen White,Claire M. Fraser,Alan Collmer +43 more
TL;DR: The complete genome sequence of the model bacterial pathogen Pseudomonas syringae pathovar tomato DC3000 (DC3000), which is pathogenic on tomato and Arabidopsis thaliana, is reported and 1,159 genes unique to DC3000 are revealed, of which 811 lack a known function.
Journal ArticleDOI
Phylogenomics of the Reproductive Parasite Wolbachia pipientis wMel: A Streamlined Genome Overrun by Mobile Genetic Elements
Martin Wu,Ling V. Sun,Jessica Vamathevan,Markus Riegler,Robert T. DeBoy,Jeremy C. Brownlie,Elizabeth A. McGraw,William Martin,Christian Esser,Nahal Ahmadinejad,Christian Wiegand,Ramana Madupu,Maureen J. Beanan,Lauren M. Brinkac,Sean C. Daugherty,A. Scott Durkin,James F. Kolonay,William C. Nelson,Yasmin Ali Mohamoud,Perris Lee,Kristi Berry,M. Brook Young,Teresa Utterback,Janice Weidman,William C. Nierman,Ian T. Paulsen,Karen E. Nelson,Hervé Tettelin,Scott Leslie O'Neill,Scott Leslie O'Neill,Jonathan A. Eisen +30 more
TL;DR: Genetic analysis of the wMel genome further supports the hypothesis that mitochondria share a common ancestor with the α-Proteobacteria, but shows little support for the grouping of mitochondria with species in the order Rickettsiales.
Journal ArticleDOI
The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria
Timothy D. Read,Timothy D. Read,Scott N. Peterson,Scott N. Peterson,Nicolas J. Tourasse,Les Baillie,Les Baillie,Ian T. Paulsen,Ian T. Paulsen,Karen E. Nelson,Hervé Tettelin,Derrick E. Fouts,Jonathan A. Eisen,Jonathan A. Eisen,Steven R. Gill,Erik Holtzapple,Ole Andreas Økstad,Erlendur Helgason,Jennifer Rilstone,Martin Wu,James F. Kolonay,Maureen J. Beanan,Robert J. Dodson,Lauren M. Brinkac,Michelle L. Gwinn,Robert T. DeBoy,Ramana Madpu,Sean C. Daugherty,A. Scott Durkin,Daniel H. Haft,William C. Nelson,Jeremy Peterson,Mihai Pop,Hoda Khouri,Diana Radune,Jonathan L. Benton,Yasmin Mahamoud,Lingxia Jiang,Ioana R. Hance,Janice Weidman,Kristi Berry,Roger D. Plaut,Alex M. Wolf,Kisha Watkins,William C. Nierman,Alyson Hazen,Robin T. Cline,Caroline Redmond,Joanne Elizabeth Thwaite,Owen White,Steven L. Salzberg,Steven L. Salzberg,Brendan Thomason,Arthur M. Friedlander,Theresa M. Koehler,Philip C. Hanna,Anne-Brit Kolstø,Claire M. Fraser,Claire M. Fraser +58 more
TL;DR: Several chromosomally encoded proteins that may contribute to pathogenicity—including haemolysins, phospholipases and iron acquisition functions—and numerous surface proteins that might be important targets for vaccines and drugs are found.
Journal ArticleDOI
Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39
Timothy D. Read,Robert C. Brunham,Caixia Shen,Steven R. Gill,John F. Heidelberg,Owen White,Erin Hickey,Jeremy Peterson,T. Utterback,Kristi Berry,S. Bass,K. Linher,Janice Weidman,Hoda Khouri,B. Craven,Cheryl Bowman,Robert J. Dodson,Michelle L. Gwinn,William C. Nelson,Robert T. DeBoy,James F. Kolonay,G. McClarty,Steven L. Salzberg,Jonathan A. Eisen,Claire M. Fraser +24 more
TL;DR: The striking synteny of the Chlamydia genomes and prevalence of tandemly duplicated genes are evidence of minimal chromosome rearrangement and foreign gene uptake, presumably owing to the ecological isolation of the obligate intracellular parasites.
Journal ArticleDOI
Complete genome sequence of Caulobacter crescentus.
William C. Nierman,Tamara Feldblyum,Michael T. Laub,Ian T. Paulsen,Karen E. Nelson,Jonathan A. Eisen,John F. Heidelberg,M. R. K. Alley,Noriko Ohta,Janine R. Maddock,Isabel Potocka,William C. Nelson,Austin Newton,Craig Stephens,Nikhil D. Phadke,Bert Ely,Robert T. DeBoy,Robert J. Dodson,A. Scott Durkin,Michelle L. Gwinn,Daniel H. Haft,James F. Kolonay,John Smit,M. B. Craven,Hoda Khouri,Jyoti Shetty,Kristi Berry,Teresa Utterback,Kevin Tran,Alex M. Wolf,Jessica Vamathevan,Maria D. Ermolaeva,Owen White,Steven L. Salzberg,J. Craig Venter,J. Craig Venter,Lucy Shapiro,Claire M. Fraser +37 more
TL;DR: C. crescentus is, to the authors' knowledge, the first free-living α-class proteobacterium to be sequenced and will serve as a foundation for exploring the biology of this group of bacteria, which includes the obligate endosymbiont and human pathogen Rickettsia prowazekii, the plant pathogen Agrobacterium tumefaciens, and the bovine andhuman pathogen Brucella abortus.