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Kun Cheng

Bio: Kun Cheng is an academic researcher from University of California, Berkeley. The author has contributed to research in topics: Cellulose & Hemicellulose. The author has an hindex of 13, co-authored 16 publications receiving 1006 citations. Previous affiliations of Kun Cheng include University of Science and Technology of China & State University of New York College of Environmental Science and Forestry.
Topics: Cellulose, Hemicellulose, Xyloglucan, Xylose, Lignin

Papers
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Journal ArticleDOI
TL;DR: Insight is provided into grass xylan synthesis and how substitutions may be modified for increased saccharification for biofuel generation and how xylosyltransferase activity onto endogenous acceptors is demonstrated.
Abstract: Xylan is the second most abundant polysaccharide on Earth and represents an immense quantity of stored energy for biofuel production. Despite its importance, most of the enzymes that synthesize xylan have yet to be identified. Xylans have a backbone of β-1,4–linked xylose residues with substitutions that include α-(1→2)–linked glucuronosyl, 4-O-methyl glucuronosyl, and α-1,2- and α-1,3-arabinofuranosyl residues. The substitutions are structurally diverse and vary by taxonomy, with grass xylan representing a unique composition distinct from dicots and other monocots. To date, no enzyme has yet been identified that is specific to grass xylan synthesis. We identified a xylose-deficient loss-of-function rice mutant in Os02g22380, a putative glycosyltransferase in a grass-specific subfamily of family GT61. We designate the mutant xax1 for xylosyl arabinosyl substitution of xylan 1. Enzymatic fingerprinting of xylan showed the specific absence in the mutant of a peak, which was isolated and determined by 1H-NMR to be (β-1,4-Xyl)4 with a β-Xylp-(1→2)-α-Araf-(1→3). Rice xax1 mutant plants are deficient in ferulic and coumaric acid, aromatic compounds known to be attached to arabinosyl residues in xylan substituted with xylosyl residues. The xax1 mutant plants exhibit an increased extractability of xylan and increased saccharification, probably reflecting a lower degree of diferulic cross-links. Activity assays with microsomes isolated from tobacco plants transiently expressing XAX1 demonstrated xylosyltransferase activity onto endogenous acceptors. Our results provide insight into grass xylan synthesis and how substitutions may be modified for increased saccharification for biofuel generation.

173 citations

Journal ArticleDOI
TL;DR: In an Arabidopsis thaliana forward genetic screen aimed at identifying mutants with altered structures of their hemicellulose xyloglucan (axy mutants) using oligosaccharide mass profiling, two nonallelic mutants that have a 20 to 35% reduction in xylglucan O-acetylation were identified.
Abstract: In an Arabidopsis thaliana forward genetic screen aimed at identifying mutants with altered structures of their hemicellulose xyloglucan (axy mutants) using oligosaccharide mass profiling, two nonallelic mutants (axy4-1 and axy4-2) that have a 20 to 35% reduction in xyloglucan O-acetylation were identified. Mapping of the mutation in axy4-1 identified AXY4, a type II transmembrane protein with a Trichome Birefringence-Like domain and a domain of unknown function (DUF231). Loss of AXY4 transcript results in a complete lack of O-acetyl substituents on xyloglucan in several tissues, except seeds. Seed xyloglucan is instead O-acetylated by the paralog AXY4like, as demonstrated by the analysis of the corresponding T-DNA insertional lines. Wall fractionation analysis of axy4 knockout mutants indicated that only a fraction containing xyloglucan is non-O-acetylated. Hence, AXY4/AXY4L is required for the O-acetylation of xyloglucan, and we propose that these proteins represent xyloglucan-specific O-acetyltransferases, although their donor and acceptor substrates have yet to be identified. An Arabidopsis ecotype, Ty-0, has reduced xyloglucan O-acetylation due to mutations in AXY4, demonstrating that O-acetylation of xyloglucan does not impact the plant’s fitness in its natural environment. The relationship of AXY4 with another previously identified group of Arabidopsis proteins involved in general wall O-acetylation, reduced wall acetylation, is discussed.

153 citations

Journal ArticleDOI
TL;DR: This paper presents a meta-analyses of the determinants of infectious disease outbreaks in eight operation theatres and shows clear patterns of disease progression that are consistent with those seen in the literature on infectious disease.

151 citations

Journal ArticleDOI
TL;DR: In this paper, the activation energies of each decomposition process were determined by Modulated TGA without any assumptions and mathematical model fitting, and the thermal decompositions, both pyrolysis and combustion, of these biomass components as well as a natural woody biomass ( Acer saccharum ) were investigated using high-resolution modified TGA.

110 citations

Journal ArticleDOI
TL;DR: Using a 90kW, 3MeV Dynamitron, the molecular weight of microcrystalline cellulose (MCC) was reduced from 82,000 to 5000Da with a dose of 100kGy as discussed by the authors.

110 citations


Cited by
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Journal ArticleDOI
TL;DR: This review provides a “beginning‐to‐end” analysis of the recent advances reported in lignin valorisation, with particular emphasis on the improved understanding of lign in's biosynthesis and structure.
Abstract: Lignin is an abundant biopolymer with a high carbon content and high aromaticity. Despite its potential as a raw material for the fuel and chemical industries, lignin remains the most poorly utilised of the lignocellulosic biopolymers. Effective valorisation of lignin requires careful fine-tuning of multiple "upstream" (i.e., lignin bioengineering, lignin isolation and "early-stage catalytic conversion of lignin") and "downstream" (i.e., lignin depolymerisation and upgrading) process stages, demanding input and understanding from a broad array of scientific disciplines. This review provides a "beginning-to-end" analysis of the recent advances reported in lignin valorisation. Particular emphasis is placed on the improved understanding of lignin's biosynthesis and structure, differences in structure and chemical bonding between native and technical lignins, emerging catalytic valorisation strategies, and the relationships between lignin structure and catalyst performance.

1,390 citations

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TL;DR: A review of the progress made in reversible addition-fragmentation chain transfer (RAFT) and macromolecular design via the interchange of xanthates (MADIX) polymerization can be found in this article.
Abstract: Among the living radical polymerization techniques, reversible addition–fragmentation chain transfer (RAFT) and macromolecular design via the interchange of xanthates (MADIX) polymerizations appear to be the most versatile processes in terms of the reaction conditions, the variety of monomers for which polymerization can be controlled, tolerance to functionalities, and the range of polymeric architectures that can be produced. This review highlights the progress made in RAFT/MADIX polymerization since the first report in 1998. It addresses, in turn, the mechanism and kinetics of the process, examines the various components of the system, including the synthesis paths of the thiocarbonyl-thio compounds used as chain-transfer agents, and the conditions of polymerization, and gives an account of the wide range of monomers that have been successfully polymerized to date, as well as the various polymeric architectures that have been produced. In the last section, this review describes the future challenges that the process will face and shows its opening to a wider scientific community as a synthetic tool for the production of functional macromolecules and materials. © 2005 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 43:5347–5393, 2005

1,098 citations

Journal ArticleDOI
TL;DR: An overview on the diversity of biomass, technological approaches and microbial contribution to the conversion of lignocellulosic biomass (LCB) into ethanol can be found in this paper.
Abstract: Bioethanol is one of the most promising and eco-friendly alternatives to fossil fuels, which is produced from renewable sources. Although almost all the current fuel ethanol is generated from edible sources (sugars and starch), lignocellulosic biomass (LCB) has drawn much attention in recent times. However, the conversion efficiency as well as ethanol yield of the biomass differs greatly with respect to the source and nature of LCB, primarily due to the variation in lignocellulosic content. Two major polysaccharides in LCB, namely, cellulose and hemicellulose firmly link to lignin and form a complex lignocellulosic network, which is highly robust and recalcitrant to depolymerization. For this reason, generation of ethanol from LCB requires a complicated conversion process that has made it commercially non-competitive. As attempts to exploit LCBs into commercial ethanol production, recent research efforts have been devoted to the techno-economic improvements of the overall conversion process, in addition to screen out promising feedstocks. This review paper presents an overview on the diversity of biomass, technological approaches and microbial contribution to the conversion of LCB into ethanol.

536 citations

Journal ArticleDOI
TL;DR: Two partially overlapping hypothetical and testable models for pectin synthesis are proposed: the consecutive glycosyltransferase model and the domain synthesis model.
Abstract: Recent progress in the identification and characterization of pectin biosynthetic proteins and the discovery of pectin domain–containing proteoglycans are changing our view of how pectin, the most complex family of plant cell wall polysaccharides, is synthesized. The functional confirmation of four types of pectin biosynthetic glycosyltransferases, the identification of multiple putative pectin glycosyl- and methyltransferases, and the characteristics of the GAUT1:GAUT7 homogalacturonan biosynthetic complex with its novel mechanism for retaining catalytic subunits in the Golgi apparatus and its 12 putative interacting proteins are beginning to provide a framework for the pectin biosynthetic process. We propose two partially overlapping hypothetical and testable models for pectin synthesis: the consecutive glycosyltransferase model and the domain synthesis model.

441 citations

Journal ArticleDOI
TL;DR: In this paper, all of the chain transfer agents encountered in the literature from 1998 to date are reported and classified according to several criteria: i) the structure of their substituents, ii) the various monomers that they have been polymerized with, and iii) the type of polymerization that has been performed (solution, dispersed media, surface initiated, and copolymerization) Moreover, the influence of various parameters is discussed, especially the CTA structure relative to the monomer and the experimental conditions (temperature, pressure, initiation, CTA/in
Abstract: Summary: Reversible addition-fragmentation chain transfer (RAFT) polymerization is a recent and very versatile controlled radical polymerization technique that has enabled the synthesis of a wide range of macromolecules with well-defined structures, compositions, and functionalities The RAFT process is based on a reversible addition-fragmentation reaction mediated by thiocarbonylthio compounds used as chain transfer agents (CTAs) A great variety of CTAs have been designed and synthesized so far with different kinds of substituents In this review, all of the CTAs encountered in the literature from 1998 to date are reported and classified according to several criteria : i) the structure of their substituents, ii) the various monomers that they have been polymerized with, and iii) the type of polymerization that has been performed (solution, dispersed media, surface initiated, and copolymerization) Moreover, the influence of various parameters is discussed, especially the CTA structure relative to the monomer and the experimental conditions (temperature, pressure, initiation, CTA/initiator ratio, concentration), in order to optimise the kinetics and the efficiency of the molecular-weight-distribution control Schematic of the RAFT polymerization

430 citations