K
Kylie R. James
Researcher at Wellcome Trust Sanger Institute
Publications - 41
Citations - 4568
Kylie R. James is an academic researcher from Wellcome Trust Sanger Institute. The author has contributed to research in topics: Immune system & T cell. The author has an hindex of 18, co-authored 39 publications receiving 3753 citations. Previous affiliations of Kylie R. James include University of Queensland & Garvan Institute of Medical Research.
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Journal ArticleDOI
The genome sequence of Schizosaccharomyces pombe
Valerie Wood,R. Gwilliam,Marie-Adèle Rajandream,M. Lyne,Rachel Lyne,A. Stewart,J. Sgouros,N. Peat,Jacqueline Hayles,Stephen Baker,D. Basham,Sharen Bowman,Karen Brooks,D. Brown,Steve D.M. Brown,Tracey Chillingworth,Carol Churcher,Mark O. Collins,R. Connor,Ann Cronin,P. Davis,Theresa Feltwell,Andrew G. Fraser,S. Gentles,Arlette Goble,N. Hamlin,David Harris,J. Hidalgo,Geoffrey M. Hodgson,S. Holroyd,T. Hornsby,S. Howarth,Elizabeth J. Huckle,Sarah E. Hunt,Kay Jagels,Kylie R. James,L. Jones,Matthew Jones,S. Leather,S. McDonald,J. McLean,P. Mooney,Sharon Moule,Karen Mungall,Lee Murphy,D. Niblett,C. Odell,Karen Oliver,Susan O'Neil,D. Pearson,Michael A. Quail,Ester Rabbinowitsch,Kim Rutherford,Simon Rutter,David L. Saunders,Kathy Seeger,Sarah Sharp,Jason Skelton,Mark Simmonds,R. Squares,S. Squares,K. Stevens,K. Taylor,Ruth Taylor,Adrian Tivey,S. Walsh,T. Warren,S. Whitehead,John Woodward,Guido Volckaert,Rita Aert,Johan Robben,B. Grymonprez,I. Weltjens,E. Vanstreels,Michael A. Rieger,M. Schafer,S. Muller-Auer,C. Gabel,M. Fuchs,C. Fritzc,E. Holzer,D. Moestl,H. Hilbert,K. Borzym,I. Langer,Alfred Beck,Hans Lehrach,Richard Reinhardt,Thomas M. Pohl,P. Eger,Wolfgang Zimmermann,H. Wedler,R. Wambutt,Bénédicte Purnelle,André Goffeau,Edouard Cadieu,Stéphane Dréano,Stéphanie Gloux,Valerie Lelaure,Stéphanie Mottier,Francis Galibert,Stephen J. Aves,Z. Xiang,Cherryl Hunt,Karen Moore,S. M. Hurst,M. Lucas,M. Rochet,Claude Gaillardin,Victor A. Tallada,Victor A. Tallada,Andrés Garzón,Andrés Garzón,G. Thode,Rafael R. Daga,Rafael R. Daga,L. Cruzado,Juan Jimenez,Juan Jimenez,Miguel del Nogal Sánchez,F. del Rey,J. Benito,Angel Domínguez,José L. Revuelta,Sergio Moreno,John Armstrong,Susan L. Forsburg,L. Cerrutti,Todd M. Lowe,W. R. McCombie,Ian T. Paulsen,Judith A. Potashkin,G. V. Shpakovski,David W. Ussery,Bart Barrell,Paul Nurse +136 more
TL;DR: The genome of fission yeast (Schizosaccharomyces pombe), which contains the smallest number of protein-coding genes yet recorded for a eukaryote, is sequenced and highly conserved genes important for eukARYotic cell organization including those required for the cytoskeleton, compartmentation, cell-cycle control, proteolysis, protein phosphorylation and RNA splicing are identified.
Journal ArticleDOI
The genome of the social amoeba Dictyostelium discoideum
Ludwig Eichinger,Justin A. Pachebat,Justin A. Pachebat,Gernot Glöckner,Marie-Adèle Rajandream,Richard Sucgang,Matthew Berriman,J. Song,Rolf Olsen,Karol Szafranski,Qikai Xu,Budi Tunggal,Sarah K. Kummerfeld,Martin Madera,Bernard Anri Konfortov,Francisco Rivero,Alan T. Bankier,Rüdiger Lehmann,N. Hamlin,Robert L. Davies,Pascale Gaudet,Petra Fey,Karen E Pilcher,Guokai Chen,David L. Saunders,Erica Sodergren,P. Davis,Arnaud Kerhornou,X. Nie,Neil Hall,Christophe Anjard,Lisa Hemphill,Nathalie Bason,Patrick Farbrother,Brian A. Desany,Eric M. Just,Takahiro Morio,René Rost,Carol Churcher,J. Cooper,Stephen F. Haydock,N. van Driessche,Ann Cronin,Ian Goodhead,Donna M. Muzny,T. Mourier,Arnab Pain,Mingyang Lu,D. Harper,R. Lindsay,Heidi Hauser,Kylie R. James,M. Quiles,M. Madan Babu,Tsuneyuki Saito,Carmen Buchrieser,A. Wardroper,A. Wardroper,Marius Felder,M. Thangavelu,D. Johnson,Andrew J Knights,H. Loulseged,Karen Mungall,Karen Oliver,Claire Price,Michael A. Quail,Hideko Urushihara,Judith Hernandez,Ester Rabbinowitsch,David Steffen,Mandy Sanders,Jun Ma,Yuji Kohara,Sarah Sharp,Mark Simmonds,S. Spiegler,Adrian Tivey,Sumio Sugano,Brian White,Danielle Walker,John Woodward,Thomas Winckler,Yoshiaki Tanaka,Gad Shaulsky,Michael Schleicher,George M. Weinstock,André Rosenthal,Edward C. Cox,Rex L. Chisholm,Richard A. Gibbs,William F. Loomis,Matthias Platzer,Robert R. Kay,Jeffrey G. Williams,Paul H. Dear,Angelika A. Noegel,Bart Barrell,Adam Kuspa +98 more
TL;DR: A proteome-based phylogeny shows that the amoebozoa diverged from the animal–fungal lineage after the plant–animal split, but Dictyostelium seems to have retained more of the diversity of the ancestral genome than have plants, animals or fungi.
Journal ArticleDOI
Single-cell RNA-seq and computational analysis using temporal mixture modelling resolves Th1/Tfh fate bifurcation in malaria
Tapio Lönnberg,Tapio Lönnberg,Valentine Svensson,Kylie R. James,Daniel Fernandez-Ruiz,Ismail Sebina,Ruddy Montandon,Megan S. F. Soon,Lily Fogg,Arya Sheela Nair,Urijah N. Liligeto,Michael J. T. Stubbington,Michael J. T. Stubbington,Lam-Ha Ly,Frederik Otzen Bagger,Max Zwiessele,Neil D. Lawrence,Fernando Souza-Fonseca-Guimaraes,Patrick T. Bunn,Christian R. Engwerda,William R. Heath,William R. Heath,Oliver Billker,Oliver Stegle,Ashraful Haque,Sarah A. Teichmann,Sarah A. Teichmann +26 more
TL;DR: The developmental trajectories of TH1 and TFH (T follicular helper) cells during blood-stage Plasmodium infection in mice were reconstructed and it was found that precursor TH cells were coached toward a TH1 but not a TFH fate by inflammatory monocytes.
Journal ArticleDOI
Cells of the human intestinal tract mapped across space and time.
Rasa Elmentaite,Natsuhiko Kumasaka,Kenny Roberts,Aaron M. Fleming,Emma Dann,Hamish W King,Vitalii Kleshchevnikov,Monika Dabrowska,Sophie Pritchard,Liam Bolt,Sara F. Vieira,Lira Mamanova,Ni Huang,Francesca Perrone,Issac Goh Kai’En,Steven Lisgo,Matilda Katan,Steven Leonard,Thomas R. W. Oliver,Thomas R. W. Oliver,C. Elizabeth Hook,Komal Nayak,Lia S. Campos,Cecilia Domínguez Conde,Emily Stephenson,Justin Engelbert,Rachel A. Botting,Krzysztof Polanski,Stijn van Dongen,Minal Patel,Michael D Morgan,Michael D Morgan,John C. Marioni,John C. Marioni,John C. Marioni,Omer Ali Bayraktar,Kerstin B Meyer,Xiaoling He,Roger A. Barker,Holm H. Uhlig,Holm H. Uhlig,Krishnaa T. Mahbubani,Kourosh Saeb-Parsy,Matthias Zilbauer,Menna R. Clatworthy,Menna R. Clatworthy,Muzlifah Haniffa,Muzlifah Haniffa,Kylie R. James,Kylie R. James,Sarah A. Teichmann,Sarah A. Teichmann +51 more
TL;DR: The cellular landscape of the human intestinal tract is dynamic throughout life, developing in utero and changing in response to functional requirements and environmental exposures as discussed by the authors, using single-cell RNA sequencing and antigen receptor analysis of almost half a million cells from up to 5 anatomical regions of the developing and up to 11 distinct anatomical regions in the healthy human gut.
Journal ArticleDOI
Distinct microbial and immune niches of the human colon.
Kylie R. James,Tomás Gomes,Rasa Elmentaite,Nitin Kumar,Emily L. Gulliver,Hamish W King,Mark D. Stares,Bethany Bareham,John R. Ferdinand,Velislava N. Petrova,Krzysztof Polanski,Samuel C. Forster,Samuel C. Forster,Samuel C. Forster,Lorna B. Jarvis,Ondrej Suchanek,Sarah Howlett,Louisa K. James,Joanne L. Jones,Kerstin B. Meyer,Menna R. Clatworthy,Menna R. Clatworthy,Kourosh Saeb-Parsy,Trevor D. Lawley,Sarah A. Teichmann,Sarah A. Teichmann,Sarah A. Teichmann +26 more
TL;DR: This work simultaneously assess microbiota and single immune cells across the healthy, adult human colon, with paired characterization of immune cells in the mesenteric lymph nodes, to delineate colonic immune niches at steady state.