L
Lam Tung Nguyen
Researcher at Medical University of Vienna
Publications - 6
Citations - 16369
Lam Tung Nguyen is an academic researcher from Medical University of Vienna. The author has contributed to research in topics: Tree (data structure) & Identifiability. The author has an hindex of 5, co-authored 6 publications receiving 9601 citations. Previous affiliations of Lam Tung Nguyen include Heidelberg Institute for Theoretical Studies & University of Vienna.
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Journal ArticleDOI
IQ-TREE: A fast and effective stochastic algorithm for estimating maximum likelihood phylogenies
TL;DR: It is shown that a combination of hill-climbing approaches and a stochastic perturbation method can be time-efficiently implemented and found higher likelihoods between 62.2% and 87.1% of the studied alignments, thus efficiently exploring the tree-space.
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W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis.
TL;DR: W-IQ-TREE supports multiple sequence types in common alignment formats and a wide range of evolutionary models including mixture and partition models, performing fast model selection, partition scheme finding, efficient tree reconstruction, ultrafast bootstrapping, branch tests, and tree topology tests.
Journal ArticleDOI
The phylogenetic likelihood library.
Tomas Flouri,Fernando Izquierdo-Carrasco,Diego Darriba,Andre J. Aberer,Lam Tung Nguyen,Bui Quang Minh,A. Von Haeseler,Alexandros Stamatakis +7 more
TL;DR: The Phylogenetic Likelihood Library is introduced, a highly optimized application programming interface for developing likelihood-based phylogenetic inference and postanalysis software that improves the sequential performance of current software by a factor of 2–10 while requiring only 1 month of programming time for integration.
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The genomic basis of circadian and circalunar timing adaptations in a midge
Tobias S. Kaiser,Birgit Poehn,Birgit Poehn,David Szkiba,Marco Preussner,Fritz J. Sedlazeck,Alexander Zrim,Tobias Neumann,Tobias Neumann,Lam Tung Nguyen,Lam Tung Nguyen,Andrea J. Betancourt,Thomas Hummel,Heiko Vogel,Silke Dorner,Florian Heyd,Arndt von Haeseler,Kristin Tessmar-Raible,Kristin Tessmar-Raible +18 more
TL;DR: The genome of Clunio marinus, a marine midge whose reproduction is timed by circadian and circalunar clocks, is sequenced and it is suggested that modulation of alternative splicing is a mechanism for natural adaptation in circadian timing.
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Complex Models of Sequence Evolution Require Accurate Estimators as Exemplified with the Invariable Site Plus Gamma Model.
TL;DR: The invariable site plus model is identifiable (model parameters can be inferred correctly given enough data) and has increased the creditability of its application to phylogeny reconstruction.