Luz E. Ochoa

Bio: Luz E. Ochoa is an academic researcher from University of São Paulo. The author has contributed to research in topics: Genus & Neotropical fish. The author has an hindex of 9, co-authored 21 publications receiving 241 citations. Previous affiliations of Luz E. Ochoa include Alexander von Humboldt Biological Resources Research Institute & Sao Paulo State University.

Phylogenomic analysis of trichomycterid catfishes (Teleostei: Siluriformes) inferred from ultraconserved elements.

Abstract: The family Trichomycteridae is one of the most diverse groups of freshwater catfishes in South and Central America with eight subfamilies, 41 genera and more than 300 valid species. Its members are widely distributed throughout South America, reaching Costa Rica in Central America and are recognized by extraordinary anatomical specializations and trophic diversity. In order to assess the phylogenetic relationships of Trichomycteridae, we collected sequence data from ultraconserved elements (UCEs) of the genome from 141 specimens of Trichomycteridae and 12 outgroup species. We used a concatenated matrix to assess the phylogenetic relationships by Bayesian inference (BI) and maximum likelihood (ML) searches and a coalescent analysis of species trees. The results show a highly resolved phylogeny with broad agreement among the three distinct analyses, providing overwhelming support for the monophyletic status of subfamily Trichomycterinae including Ituglanis and Scleronema. Previous relationship hypotheses among subfamilies are strongly corroborated, such as the sister relationship between Copionodontinae and Trichogeninae forming a sister clade to the remaining trichomycterids and the intrafamilial clade TSVSG (Tridentinae-Stegophilinae-Vandelliinae-Sarcoglanidinae-Glanapteryginae). Monophyly of Glanapteryginae and Sarcoglanidinae was not supported and the enigmatic Potamoglanis is placed outside Tridentinae.

Cryptic species in the Neotropical fish genus Curimatopsis (Teleostei, Characiformes)

Abstract: Detritivores of the fish family Curimatidae are assigned to eight genera, one of which, the Curimatopsis, with only five species, is the least speciose genus and sister to other seven genera in the family. Ongoing morphological investigations reveal, however, the likely existence of additional species. In this study, fifty-one specimens of Curimatopsis from multiple rivers of the Amazon, Paraguay and Suriname drainages were identified morphologically according to the present species concepts and then barcoded using the universal cytochrome c oxidase subunit I (COI) mitochondrial marker. Species delimitation analyses were conducted using Bayesian methods through the general mixed Yule-coalescent analysis combined with conventional likelihood, genetic distance and haplotypic diversity approaches. We found eleven well-supported clusters that represent four of the named species and seven cryptic, undescribed species of Curimatopsis. Our results show a clear delimitation of species boundaries constrained by distinct Amazonian river ecotones that may have promoted intrageneric lineage diversification. This is the first of a series of genetic studies applicable to future taxonomic, phylogenetic and evolutionary studies across the Curimatidae.

Accelerated Diversification Explains the Exceptional Species Richness of Tropical Characoid Fishes.

Abstract: The Neotropics harbor the most species-rich freshwater fish fauna on the planet, but the timing of that exceptional diversification remains unclear. Did the Neotropics accumulate species steadily throughout their long history, or attain their remarkable diversity recently? Biologists have long debated the relative support for these museum and cradle hypotheses, but few phylogenies of megadiverse tropical clades have included sufficient taxa to distinguish between them. We used 1,288 ultraconserved element loci (UCE) spanning 293 species, 211 genera and 21 families of characoid fishes to reconstruct a new, fossil-calibrated phylogeny and infer the most likely diversification scenario for a clade that includes a third of Neotropical fish diversity. This phylogeny implies paraphyly of the traditional delimitation of Characiformes because it resolves the largely Neotropical Characoidei as the sister lineage of Siluriformes (catfishes), rather than the African Citharinodei. Time-calibrated phylogenies indicate an ancient origin of major characoid lineages and reveal a much more recent emergence of most characoid species. Diversification rate analyses infer increased speciation and decreased extinction rates during the Oligocene at around 30 million years ago (Ma) during a period of mega-wetland formation in the proto-Orinoco-Amazonas. Three species-rich and ecomorphologically diverse lineages (Anostomidae, Serrasalmidae, and Characidae) that originated more than 60 Ma in the Paleocene experienced particularly notable bursts of Oligocene diversification and now account collectively for 68% of the approximately 2,150 species of Characoidei. In addition to paleogeographic changes, we discuss potential accelerants of diversification in these three lineages. While the Neotropics accumulated a museum of ecomorphologically diverse characoid lineages long ago, this geologically dynamic region also cradled a much more recent birth of remarkable species-level diversity.

Codes for Natural History Collections in Ichthyology and Herpetology

Abstract: Assembled here is a reasonably complete list of annotated codes for historical and modern natural history collections associated with lost and extant specimens of fossil and Recent fishes, amphibians, and reptiles. A total of 3,845 codes are anchored to about 2,064 distinct collections and/or institutions in 155 countries. At least 633 of those collections are exclusively paleontological or include fossil specimens. The list is primarily derived from the scientific literature and may serve as a resource for plainly citing specimens in publications and for linking such citations to records in online databases.

The Fishes of the Amazon: Distribution and Biogeographical Patterns, with a Comprehensive List of Species

Abstract: We provide a general compilation of the diversity and geographical distribution of Amazonian fishes, updated to the end of 2018. Our database includes documented distributions of 4214 species (both Amazonian and from surrounding basins), compiled from published information plus original data from ichthyological collections. Our results show that the Amazon basin comprises the most diverse regional assemblage of freshwater fishes in the world, with 2716 valid species (1696 of which are endemic) representing 529 genera, 60 families, and 18 orders. These data permit a view of the diversity and distribution of Amazonian fishes on a basinwide scale, which in turn allows the identification of congruent biogeographical patterns, here defined as the overlapping distributions of two or more lineages (species or monophyletic groups). We recognize 20 distinct distributional patterns of Amazonian fishes, which are herein individually delimited, named, and diagnosed. Not all these patterns are associated with identifiable geographical barriers, and some may result from ecological constraints. All the major Amazonian subdrainages fit into more than one biogeographical pattern. This fact reveals the complex history of hydrographical basins and shows that modern basin-defined units contribute relatively little as explanatory factors for the present distributions of Amazonian fishes. An understanding of geomorphological processes and associated paleographic landscape changes provides a far better background for interpreting observed patterns. Our results are expected to provide a framework for future studies on the diversification and historical biogeography of the Amazonian aquatic biota.

Goliath catfish spawning in the far western Amazon confirmed by the distribution of mature adults, drifting larvae and migrating juveniles

Abstract: We mapped the inferred long-distance migrations of four species of Amazonian goliath catfishes (Brachyplatystoma rousseauxii, B. platynemum, B. juruense and B. vaillantii) based on the presence of individuals with mature gonads and conducted statistical analysis of the expected long-distance downstream migrations of their larvae and juveniles. By linking the distribution of larval, juvenile and mature adult size classes across the Amazon, the results showed: (i) that the main spawning regions of these goliath catfish species are in the western Amazon; (ii) at least three species-B. rousseauxii, B. platynemum, and B. juruense-spawn partially or mainly as far upstream as the Andes; (iii) the main spawning area of B. rousseauxii is in or near the Andes; and (iv) the life history migration distances of B. rousseauxii are the longest strictly freshwater fish migrations in the world. These results provide an empirical baseline for tagging experiments, life histories extrapolated from otolith microchemistry interpretations and other methods to establish goliath catfish migratory routes, their seasonal timing and possible return (homing) to western headwater tributaries where they were born.