M
Manolis Kellis
Researcher at Massachusetts Institute of Technology
Publications - 448
Citations - 132627
Manolis Kellis is an academic researcher from Massachusetts Institute of Technology. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 128, co-authored 405 publications receiving 112181 citations. Previous affiliations of Manolis Kellis include Broad Institute & Epigenomics AG.
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Evidence of abundant purifying selection in humans for recently-acquired regulatory functions
TL;DR: Examination of regions of the human genome that did not show conservation among mammals and found evidence for a human lineage-specific constraint spanning approximately 4% of the genome that is biochemically active but not directly associated with genes, suggests continued turnover in regulatory regions.
Network deconvolution as a general method to distinguish direct dependencies in networks
Soheil Feizi,Soheil Feizi,Daniel Marbach,Daniel Marbach,Muriel Medard,Manolis Kellis,Manolis Kellis +6 more
TL;DR: In this paper, a general method for inferring direct effects from an observed correlation matrix containing both direct and indirect effects is presented, which is the inverse of network convolution, and introduces an algorithm that removes the combined effect of all indirect paths of arbitrary length in a closed-form solution by exploiting eigendecomposition and infinite-series sums.
Journal ArticleDOI
Reliable prediction of regulator targets using 12 Drosophila genomes
TL;DR: A general methodology for the comparative identification of functional motif instances across many related species is developed, using a phylogenetic framework that accounts for the evolutionary relationships between species, allows for motif movements, and is robust against missing data due to artifacts in sequencing, assembly, or alignment.
Evidence of Abundant Purifying Selection in Humans for Recently Acquired Regulatory Functions
TL;DR: In this paper, a broad range of transcribed and regulatory nonconserved elements show decreased human diversity, suggesting lineage-specific purifying selection, while conserved elements lacking activity show increased human diversity.
Journal ArticleDOI
Genomic Rna Elements Drive Phase Separation of the Sars-Cov-2 Nucleocapsid
Christiane Iserman,Christine A. Roden,Mark A. Boerneke,Rachel Sealfon,Grace A. McLaughlin,Irwin Jungreis,Irwin Jungreis,Ethan J. Fritch,Yixuan J. Hou,Joanne Ekena,Chase A. Weidmann,Chandra L. Theesfeld,Manolis Kellis,Manolis Kellis,Olga G. Troyanskaya,Ralph S. Baric,Timothy P. Sheahan,Kevin M. Weeks,Amy S. Gladfelter +18 more
TL;DR: Condensation of N-protein is RNA sequence and structure specific, sensitive to human body temperature, and manipulatable with small molecules, and presents a screenable process for identifying antiviral compounds effective against SARS-CoV-2.