M
Manolis Kellis
Researcher at Massachusetts Institute of Technology
Publications - 448
Citations - 132627
Manolis Kellis is an academic researcher from Massachusetts Institute of Technology. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 128, co-authored 405 publications receiving 112181 citations. Previous affiliations of Manolis Kellis include Broad Institute & Epigenomics AG.
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Thousands of novel unannotated proteins expand the MHC I immunopeptidome in cancer
Tamara Ouspenskaia,Travis Law,Karl R. Clauser,Susan Klaeger,Siranush Sarkizova,Siranush Sarkizova,François Aguet,Bo Li,Bo Li,Elena Christian,Binyamin A. Knisbacher,Phuong M. Le,Christina R. Hartigan,Hasmik Keshishian,Annie Apffel,Giacomo Oliveira,Wandi Zhang,Yuen Ting Chow,Zhe Ji,Irwin Jungreis,Irwin Jungreis,Sachet A. Shukla,Sachet A. Shukla,Pavan Bachireddy,Manolis Kellis,Manolis Kellis,Gad Getz,Nir Hacohen,Nir Hacohen,Derin B. Keskin,Derin B. Keskin,Steven A. Carr,Catherine J. Wu,Catherine J. Wu,Aviv Regev,Aviv Regev +35 more
TL;DR: NuORFs thus expand the pool of MHC I-presented, tumor-specific peptides, targetable by immunotherapies, by detecting somatic mutations in nuORFs of cancer samples and identifiednuORFs with tumor- specific translation in melanoma, chronic lymphocytic leukemia and glioblastoma.
Journal ArticleDOI
Translation Initiation Site Profiling Reveals Widespread Synthesis of Non-AUG-Initiated Protein Isoforms in Yeast
Amy Rose Eisenberg,Andrea Higdon,Ina Hollerer,Alexander P. Fields,Irwin Jungreis,Paige D. Diamond,Manolis Kellis,Manolis Kellis,Marko Jovanovic,Gloria A. Brar +9 more
TL;DR: Findings reveal widespread production of non-canonical protein isoforms and unexpected complexity to the rules by which even a simple eukaryotic genome is decoded.
Journal ArticleDOI
Diverse patterns of genomic targeting by transcriptional regulators in Drosophila melanogaster
Matthew Slattery,Lijia Ma,Rebecca Spokony,Robert K. Arthur,Pouya Kheradpour,Anshul Kundaje,Nicolas Nègre,Nicolas Nègre,Alex Crofts,Ryan Ptashkin,Jennifer Zieba,Alexander Ostapenko,Sarah Suchy,Alec Victorsen,Nader Jameel,A. Jason Grundstad,Wenxuan Gao,Jennifer R. Moran,E. Jay Rehm,Robert L. Grossman,Manolis Kellis,Manolis Kellis,Kevin P. White +22 more
TL;DR: An updated map of the Drosophila melanogaster regulatory genome based on the location of 84 TRFs at various stages of development reveals a variety of genomic targeting patterns, including factors with strong preferences toward proximal promoter binding, factors that target intergenic and intronic DNA, and factors with distinct chromatin state preferences.
Journal ArticleDOI
Multi-scale chromatin state annotation using a hierarchical hidden Markov model.
Eugenio Marco,Wouter Meuleman,Jialiang Huang,Kimberly Glass,Luca Pinello,Jianrong Wang,Manolis Kellis,Guo-Cheng Yuan +7 more
TL;DR: Li et al. as mentioned in this paper proposed a hierarchical hidden Markov model (diHMM) to identify domain-level states that vary in nucleosome-level state composition, spatial distribution and functionality.
Deep coverage whole genome sequences and plasma lipoprotein(a) in individuals of European and African ancestries
Seyedeh M. Zekavat,Sanni Ruotsalainen,Robert E. Handsaker,Maris Alver,Jonathan M. Bloom,Timothy Poterba,Cotton Seed,Jason Ernst,Mark Chaffin,Jesse M. Engreitz,Gina M. Peloso,Ani Manichaikul,Chaojie Yang,Kathleen A. Ryan,Mao Fu,W. Craig Johnson,Michael Y. Tsai,Matthew J. Budoff,Vasan S. Ramachandran,L. Adrienne Cupples,Jerome I. Rotter,Stephen S. Rich,Wendy S. Post,Braxton D. Mitchell,Adolfo Correa,Andres Metspalu,James G. Wilson,Veikko Salomaa,Manolis Kellis,Mark J. Daly,Benjamin M. Neale,Steven A. McCarroll,Ida Surakka,Tõnu Esko,Andrea Ganna,Samuli Ripatti,Sekar Kathiresan,Pradeep Natarajan +37 more
TL;DR: Deep-coverage whole genome sequencing in 8392 individuals of European and African ancestry is used to discover and interpret both single-nucleotide variants and copy number (CN) variation associated with Lp(a), and finds that LPA risk genotypes confer greater relative risk for incident atherosclerotic cardiovascular diseases compared to directly measured LP(a).