M
Manolis Kellis
Researcher at Massachusetts Institute of Technology
Publications - 448
Citations - 132627
Manolis Kellis is an academic researcher from Massachusetts Institute of Technology. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 128, co-authored 405 publications receiving 112181 citations. Previous affiliations of Manolis Kellis include Broad Institute & Epigenomics AG.
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High-resolution genome-wide functional dissection of transcriptional regulatory regions in human
Xinchen Wang,Liang He,Sarah M. Goggin,Alham Saadat,Li Wang,Melina Claussnitzer,Manolis Kellis +6 more
TL;DR: High-Definition Reporter Assay provides a general, scalable, high-throughput, and high-resolution approach for experimental dissection of regulatory regions and driver nucleotides in the context of human biology and disease.
Posted ContentDOI
Elucidation of Codon Usage Signatures across the Domains of Life
TL;DR: This work shows that a single amino acid, arginine, is the major contributor to codon usage bias differences across domains of life, and exploits the finding to show that the identified domain-specific codon bias signatures can be used to classify a given sequence into its corresponding domain with high accuracy.
Posted ContentDOI
Deep coverage whole genome sequences and plasma lipoprotein(a) in individuals of European and African ancestries
Seyedeh M. Zekavat,Sanni Ruotsalainen,Robert E. Handsaker,Maris Alver,Jonathan M. Bloom,Tim Poterba,Cotton Seed,Jason Ernst,Mark Chaffin,Jesse M. Engreitz,Adolfo Correa,Andres Metspalu,Veikko Salomaa,Manolis Kellis,Mark J. Daly,James G. Wilson,Benjamin M. Neale,Steven A. McCarroll,Ida Surakka,Tõnu Esko,Andrea Ganna,Samuli Ripatti,Sekar Kathiresan,Pradeep Natarajan +23 more
TL;DR: In this paper, a deep-coverage whole-genome sequencing in 8,392 individuals of European and African American ancestries was performed to comprehensively delineate the inherited basis for plasma Lp(a), where apolipoprotein(a) was found to be 85% heritable among African Americans and 75% among Europeans, with notable inter-ethnic heterogeneity.
Posted ContentDOI
Distant regulatory effects of genetic variation in multiple human tissues
Brian Jo,Yiping He,Benjamin J. Strober,Princy Parsana,François Aguet,Andrew A. Brown,SE Castel,Eric R. Gamazon,Ariel D. H. Gewirtz,Genna Gliner,Buhm Han,Alice He,Ey Kang,Ian C. McDowell,Xiao Li,Pejman Mohammadi,Christine B. Peterson,Gerald Quon,Ashis Saha,Ayellet V. Segrè,Jae Hoon Sul,TJ Sullivan,Kristin G. Ardlie,Christopher D. Brown,Donald F. Conrad,Nancy J. Cox,Emmanouil T. Dermitzakis,Eskin E,Manolis Kellis,Tuuli Lappalainen,Chiara Sabatti,Barbara E. Engelhardt,Alexis Battle +32 more
TL;DR: These analyses provide a comprehensive characterization of trans-eQTLs across human tissues, which contribute to an improved understanding of the tissue-specific cellular mechanisms of regulatory genetic variation.
Journal ArticleDOI
Reply to Brunet and Doolittle: Both selected effect and causal role elements can influence human biology and disease
Manolis Kellis,Manolis Kellis,Barbara J. Wold,Michael Snyder,Bradley E. Bernstein,Anshul Kundaje,Anshul Kundaje,Anshul Kundaje,Georgi K. Marinov,Lucas D. Ward,Lucas D. Ward,Ewan Birney,Gregory E. Crawford,Job Dekker,Ian Dunham,Laura Elnitski,Peggy J. Farnham,Elise A. Feingold,Mark Gerstein,Morgan C. Giddings,David M. Gilbert,Thomas R. Gingeras,Eric D. Green,Roderic Guigó,Tim Hubbard,Jim Kent,Jason D. Lieb,Richard M. Myers,Michael J. Pazin,Bing Ren,John A. Stamatoyannopoulos,Zhiping Weng,Kevin P. White,Ross C. Hardison +33 more
TL;DR: The Encyclopedia of DNA Elements (ENCODE) catalog and similar data resources are viewed as important foundations for understanding the DNA elements and molecular mechanisms underlying human biology and disease.