M
Marek Eliáš
Researcher at University of Ostrava
Publications - 107
Citations - 8887
Marek Eliáš is an academic researcher from University of Ostrava. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 32, co-authored 97 publications receiving 7712 citations. Previous affiliations of Marek Eliáš include Charles University in Prague & National Institutes of Health.
Papers
More filters
Journal ArticleDOI
The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions
Sabeeha S. Merchant,Simon E. Prochnik,Olivier Vallon,Elizabeth H. Harris,Steven J. Karpowicz,George B. Witman,Astrid Terry,Asaf Salamov,Lillian K. Fritz-Laylin,Laurence Maréchal-Drouard,Wallace F. Marshall,Liang-Hu Qu,David R. Nelson,Anton A. Sanderfoot,Martin H. Spalding,Vladimir V. Kapitonov,Qinghu Ren,Patrick J. Ferris,Erika Lindquist,Harris Shapiro,Susan Lucas,Jane Grimwood,Jeremy Schmutz,Pierre Cardol,Pierre Cardol,Heriberto Cerutti,Guillaume Chanfreau,Chun-Long Chen,Valérie Cognat,Martin T. Croft,Rachel M. Dent,Susan K. Dutcher,Emilio Fernández,Hideya Fukuzawa,David González-Ballester,Diego González-Halphen,Armin Hallmann,Marc Hanikenne,Michael Hippler,William Inwood,Kamel Jabbari,Ming Kalanon,Richard Kuras,Paul A. Lefebvre,Stéphane D. Lemaire,Alexey V. Lobanov,Martin Lohr,Andrea L Manuell,Iris Meier,Laurens Mets,Maria Mittag,Telsa M. Mittelmeier,James V. Moroney,Jeffrey L. Moseley,Carolyn A. Napoli,Aurora M. Nedelcu,Krishna K. Niyogi,Sergey V. Novoselov,Ian T. Paulsen,Greg Pazour,Saul Purton,Jean-Philippe Ral,Diego Mauricio Riaño-Pachón,Wayne R. Riekhof,Linda A. Rymarquis,Michael Schroda,David B. Stern,James G. Umen,Robert D. Willows,Nedra F. Wilson,Sara L. Zimmer,Jens Allmer,Janneke Balk,Katerina Bisova,Chong-Jian Chen,Marek Eliáš,Karla C Gendler,Charles R. Hauser,Mary Rose Lamb,Heidi K. Ledford,Joanne C. Long,Jun Minagawa,M. Dudley Page,Junmin Pan,Wirulda Pootakham,Sanja Roje,Annkatrin Rose,Eric Stahlberg,Aimee M. Terauchi,Pinfen Yang,Steven G. Ball,Chris Bowler,Carol L. Dieckmann,Vadim N. Gladyshev,Pamela J. Green,Richard A. Jorgensen,Stephen P. Mayfield,Bernd Mueller-Roeber,Sathish Rajamani,Richard T. Sayre,Peter Brokstein,Inna Dubchak,David Goodstein,Leila Hornick,Y. Wayne Huang,Jinal Jhaveri,Yigong Luo,Diego Martinez,Wing Chi Abby Ngau,Bobby Otillar,Alexander Poliakov,Aaron Porter,Lukasz Szajkowski,Gregory Werner,Kemin Zhou,Igor V. Grigoriev,Daniel S. Rokhsar,Daniel S. Rokhsar,Arthur R. Grossman +118 more
TL;DR: Analyses of the Chlamydomonas genome advance the understanding of the ancestral eukaryotic cell, reveal previously unknown genes associated with photosynthetic and flagellar functions, and establish links between ciliopathy and the composition and function of flagella.
Journal ArticleDOI
The Ectocarpus genome and the independent evolution of multicellularity in brown algae
J. Mark Cock,Lieven Sterck,Pierre Rouzé,Delphine Scornet,Andrew E. Allen,Grigoris D. Amoutzias,Véronique Anthouard,François Artiguenave,Jean-Marc Aury,Jonathan H. Badger,Bank Beszteri,Kenny Billiau,Eric Bonnet,John H. F. Bothwell,Chris Bowler,Catherine Boyen,Colin Brownlee,Carl J. Carrano,Bénédicte Charrier,Ga Youn Cho,Susana M. Coelho,Jonas Collén,Erwan Corre,Corinne Da Silva,Ludovic Delage,Nicolas Delaroque,Simon M. Dittami,Sylvie Doulbeau,Marek Eliáš,Garry Farnham,Claire M. M. Gachon,Bernhard Gschloessl,Svenja Heesch,Kamel Jabbari,Claire Jubin,Hiroshi Kawai,Kei Kimura,Bernard Kloareg,Frithjof C. Küpper,Daniel Lang,Aude Le Bail,Catherine Leblanc,Patrice Lerouge,Martin Lohr,Pascal J. Lopez,Cindy Martens,Florian Maumus,Gurvan Michel,Diego Miranda-Saavedra,Julia Morales,Hervé Moreau,Taizo Motomura,Chikako Nagasato,Carolyn A. Napoli,David R. Nelson,Pi Nyvall-Collén,Akira F. Peters,Cyril Pommier,Philippe Potin,Julie Poulain,Hadi Quesneville,Betsy Read,Stefan A. Rensing,Andrés Ritter,Sylvie Rousvoal,Manoj P. Samanta,Gaelle Samson,Declan C. Schroeder,Béatrice Segurens,Martina Strittmatter,Thierry Tonon,James W. Tregear,Klaus Valentin,Peter von Dassow,Takahiro Yamagishi,Yves Van de Peer,Patrick Wincker +76 more
TL;DR: The Ectocarpus genome sequence represents an important step towards developing this organism as a model species, providing the possibility to combine genomic and genetic approaches to explore these and other aspects of brown algal biology further.
Journal ArticleDOI
Pan genome of the phytoplankton Emiliania underpins its global distribution
Betsy A. Read,Jessica Kegel,Mary J. Klute,Alan Kuo,Stephane C. Lefebvre,Florian Maumus,Christoph Mayer,John P. Miller,Adam Monier,Asaf Salamov,Jeremy R. Young,María Aguilar,Jean-Michel Claverie,Stephan Frickenhaus,Karina Gonzalez,Emily K. Herman,Yao-Cheng Lin,Johnathan A. Napier,Hiroyuki Ogata,Analissa F. Sarno,Jeremy Shmutz,Declan C. Schroeder,Colomban de Vargas,Frédéric Verret,Peter von Dassow,Klaus Valentin,Yves Van de Peer,Glen L. Wheeler,Joel B. Dacks,Charles F. Delwiche,Sonya T. Dyhrman,Sonya T. Dyhrman,Sonya T. Dyhrman,Gernot Glöckner,Uwe John,Thomas A. Richards,Alexandra Z. Worden,Xiaoyu Zhang,Igor V. Grigoriev,Andrew E. Allen,Kay D. Bidle,Kay D. Bidle,Mark Borodovsky,Chris Bowler,Colin Brownlee,Colin Brownlee,J. Mark Cock,Marek Eliáš,Vadim N. Gladyshev,Marco Groth,Chittibabu Guda,Ahmad R. Hadaegh,M. D. Iglesias-Rodriguez,Jerry Jenkins,Bethan M. Jones,Tracy Lawson,Florian Leese,Erika Lindquist,Alexei Lobanov,Alexandre Lomsadze,Shehre-Banoo Malik,Mary E. Marsh,Luke C. M. Mackinder,Thomas Mock,Bernd Mueller-Roeber,António Pagarete,Micaela S. Parker,Ian Probert,Hadi Quesneville,Christine A. Raines,Stefan A. Rensing,Stefan A. Rensing,Diego Mauricio Riaño-Pachón,Sophie Richier,Sophie Richier,Sebastian D. Rokitta,Yoshihiro Shiraiwa,Darren M. Soanes,Mark van der Giezen,Thomas M. Wahlund,Bryony A. P. Williams,Willie Wilson,Gordon Wolfe,Louie L. Wurch,Louie L. Wurch +84 more
TL;DR: Comparisons across strains demonstrate that E. huxleyi, which has long been considered a single species, harbours extensive genome variability reflected in different metabolic repertoires, and reveals a pan genome (core genes plus genes distributed variably between strains) probably supported by an atypical complement of repetitive sequence in the genome.
Journal ArticleDOI
Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs.
Bruce A. Curtis,Goro Tanifuji,Goro Tanifuji,Fabien Burki,Ansgar Gruber,Ansgar Gruber,Manuel Irimia,Shinichiro Maruyama,Shinichiro Maruyama,Maria Cecilia Arias,Steven G. Ball,Gillian H. Gile,Gillian H. Gile,Yoshihisa Hirakawa,Julia F. Hopkins,Julia F. Hopkins,Alan Kuo,Stefan A. Rensing,Stefan A. Rensing,Jeremy Schmutz,Aikaterini Symeonidi,Marek Eliáš,Robert J.M. Eveleigh,Emily K. Herman,Mary J. Klute,Takuro Nakayama,Takuro Nakayama,Miroslav Oborník,Miroslav Oborník,Adrian Reyes-Prieto,Adrian Reyes-Prieto,E. Virginia Armbrust,Stephen J. Aves,Robert G. Beiko,Pedro M. Coutinho,Joel B. Dacks,Dion G. Durnford,Naomi M. Fast,Beverley R. Green,Cameron J. Grisdale,Franziska Hempel,Bernard Henrissat,Marc P. Höppner,Ken-ichiro Ishida,Eunsoo Kim,Luděk Kořený,Luděk Kořený,Peter G. Kroth,Yuan Liu,Yuan Liu,Shehre-Banoo Malik,Shehre-Banoo Malik,Uwe G. Maier,Darcy L. McRose,Thomas Mock,Jonathan A. D. Neilson,Naoko T. Onodera,Naoko T. Onodera,Anthony M. Poole,Ellen J. Pritham,Thomas A. Richards,Gabrielle Rocap,Scott William Roy,Chihiro Sarai,Sarah Schaack,Shu Shirato,Claudio H. Slamovits,Claudio H. Slamovits,David F. Spencer,David F. Spencer,Shigekatsu Suzuki,Alexandra Z. Worden,Stefan Zauner,Kerrie Barry,Callum J. Bell,Arvind K. Bharti,John A. Crow,Jane Grimwood,Robin Kramer,Erika Lindquist,Susan Lucas,Asaf Salamov,Geoffrey I. McFadden,Christopher E. Lane,Patrick J. Keeling,Michael W. Gray,Michael W. Gray,Igor V. Grigoriev,John M. Archibald,John M. Archibald +89 more
TL;DR: The nuclear genomes of the cryptophyte Guillardia theta and the chlorarachniophyte Bigelowiella natans are sequenced and extensive genetic and biochemical mosaicism is revealed, with both host- and endosymbiont-derived genes servicing the mitochondrion, the host cell cytosol, the plastid and the remnant endosYmbionT cytOSol of both algae.
Journal ArticleDOI
Genomic Analysis of the Basal Lineage Fungus Rhizopus oryzae Reveals a Whole-Genome Duplication
Li-Jun Ma,Ashraf S. Ibrahim,Christopher D. Skory,Manfred Grabherr,Gertraud Burger,Margi I. Butler,Marek Eliáš,Alexander Idnurm,B. Franz Lang,Teruo Sone,Ayumi Abe,Sarah E. Calvo,Luis M. Corrochano,Reinhard Engels,Jianmin Fu,Wilhelm Hansberg,Jung Mi Kim,Chinnappa D. Kodira,Michael Koehrsen,Bo Liu,Diego Miranda-Saavedra,Sinéad B. O'Leary,Lucila Ortiz-Castellanos,Russell T. M. Poulter,Julio Rodríguez-Romero,José Ruiz-Herrera,Yao Qing Shen,Qiandong Zeng,James E. Galagan,Bruce W. Birren,Christina A. Cuomo,Brian L. Wickes +31 more
TL;DR: The order and genomic arrangement of the duplicated gene pairs and their common phylogenetic origin provide evidence for an ancestral whole-genome duplication (WGD) event that resulted in the expansion of multiple gene families related to cell growth and signal transduction, as well as secreted aspartic protease and subtilase protein families, which are known fungal virulence factors.