Marie-Lise Dubernet

Bio: Marie-Lise Dubernet is an academic researcher from PSL Research University. The author has contributed to research in topics: Potential energy surface & Potential energy. The author has an hindex of 24, co-authored 48 publications receiving 2229 citations. Previous affiliations of Marie-Lise Dubernet include Pierre-and-Marie-Curie University & Janssen Pharmaceutica.

Water in star-forming regions with the Herschel Space Observatory (WISH). I. Overview of key program and first results

Abstract: Water In Star-forming regions with Herschel (WISH) is a key program on the Herschel Space Observatory designed to probe the physical and chemical structures of young stellar objects using water and related molecules and to follow the water abundance from collapsing clouds to planet-forming disks. About 80 sources are targeted, covering a wide ranee of luminosities-from low ( 10(5) L-circle dot)-and a wide range of evolutionary stages-from cold prestellar cores to warm protostellar envelopes and outflows to disks around young stars. Both the HIFI and PACS instruments are used to observe a variety of lines of H2O, (H2O)-O-18 and chemically related species at the source position and in small maps around the protostars and selected outflow positions. In addition, high-frequency lines of CO, (CO)-C-13, and (CO)-O-18 are obtained with Herschel and are complemented by ground-based observations of dust continuum, HDO, CO and its isotopologs, and other molecules to ensure a self-consistent data set for analysis. An overview of the scientific motivation and observational strategy of the program is given, together with the modeling approach and analysis tools that have been developed. Initial science results are presented. These include a lack of water in cold gas at abundances that are lower than most predictions, strong water emission from shocks in protostellar environments, the importance of UV radiation in heating the gas along outflow walls across the full range of luminosities, and surprisingly widespread detection of the chemically related hydrides OH+ and H2O+ in outflows and foreground gas. Quantitative estimates of the energy budget indicate that H2O is generally not the dominant coolant in the warm dense gas associated with protostars. Very deep limits on the cold gaseous water reservoir in the outer regions of protoplanetary disks are obtained that have profound implications for our understanding of grain growth and mixing in disks.

BASECOL2012: A collisional database repository and web service within the Virtual Atomic and Molecular Data Centre (VAMDC)

Abstract: The BASECOL2012 database is a repository of collisional data and a web service within the Virtual Atomic and Molecular Data Centre (VAMDC, http://www.vamdc.eu). It contains rate coefficients for the collisional excitation of rotational, ro-vibrational, vibrational, fine, and hyperfine levels of molecules by atoms, molecules, and electrons, as well as fine-structure excitation of some atoms that are relevant to interstellar and circumstellar astrophysical applications. Submissions of new published collisional rate coefficients sets are welcome, and they will be critically evaluated before inclusion in the database. In addition, BASECOL2012 provides spectroscopic data queried dynamically from various spectroscopic databases using the VAMDC technology. These spectroscopic data are conveniently matched to the in-house collisional excitation rate coefficients using the SPECTCOL sofware package (http:// vamdc.eu/software), and the combined sets of data can be downloaded from the BASECOL2012 website. As a partner of the VAMDC, BASECOL2012 is accessible from the general VAMDC portal (http://portal.vamdc.eu) and from user tools such as SPECTCOL.

The dynamics of open-shell Van der Waals complexes

Abstract: The theory of Van der Waals complexes formed from atoms and open‐shell (Σ and Π) diatomic molecules is developed, paying particular attention to the quantum numbers that are conserved in the complex and the angular momentum coupling cases that may be observed. Complexes formed from diatoms in multiplet Σ states may exhibit several different coupling schemes closely analogous to Hund’s coupling cases for diatomic molecules. Complexes formed from diatoms in Π states usually exhibit a coupling scheme in which the (signed) projection P of the diatom angular momentum j onto the intermolecular axis is nearly conserved. Correlation diagrams showing the bending energy levels as a function of potential anisotropy are given for complexes containing diatomic molecules in both Σ and Π states. The transition from free internal rotor quantum numbers to near‐rigid bender quantum numbers with increasing anisotropy is investigated. The cases of Ar–OH and Ne–OH are considered as examples.

Herschel observations of EXtra-Ordinary Sources: the present and future of spectral surveys with Herschel/HIFI

Abstract: We present initial results from the Herschel GT key program: Herschel observations of EXtra-Ordinary Sources (HEXOS) and outline the promise and potential of spectral surveys with Herschel/HIFI. The HIFI instrument offers unprecedented sensitivity, as well as continuous spectral coverage across the gaps imposed by the atmosphere, opening up a largely unexplored wavelength regime to high-resolution spectroscopy. We show the spectrum of Orion KL between 480 and 560 GHz and from 1.06 to 1.115 THz. From these data, we confirm that HIFI separately measures the dust continuum and spectrally resolves emission lines in Orion KL. Based on this capability we demonstrate that the line contribution to the broad-band continuum in this molecule-rich source is ~20-40% below 1 THz and declines to a few percent at higher frequencies. We also tentatively identify multiple transitions of HD18O in the spectra. The first detection of this rare isotopologue in the interstellar medium suggests that HDO emission is optically thick in the Orion hot core with HDO/H2O ~ 0.02. We discuss the implications of this detection for the water D/H ratio in hot cores.

Quasi-classical rate coefficient calculations for the rotational (de)excitation of H2O by H2

Abstract: Context. The interpretation of water line emission from existing observations and future HIFI/Herschel data requires a detailed knowledge of collisional rate coefficients. Among all relevant collisional mechanisms, the rotational (de)excitation of H 2 O by H 2 molecules is the process of most interest in interstellar space. Aims. To determine rate coefficients for rotational de-excitation among the lowest 45 para and 45 ortho rotational levels of H 2 O colliding with both para and ortho-H 2 in the temperature range 20-2000 K. Methods. Rate coefficients are calculated on a recent high-accuracy H 2 O-H 2 potential energy surface using quasi-classical trajectory calculations. Trajectories are sampled by a canonical Monte-Carlo procedure. H 2 molecules are assumed to be rotationally thermalized at the kinetic temperature. Results. By comparison with quantum calculations available for low lying levels, classical rates are found to be accurate within a factor of 1-3 for the dominant transitions, that is those with rates larger than a few 10 -12 cm 3 s -1 . Large velocity gradient modelling shows that the new rates have a significant impact on emission line fluxes and that they should be adopted in any detailed population model of water in warm and hot environments.

疟原虫var基因转换速率变化导致抗原变异[英]／Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

Abstract: 抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1（PfPMP1）与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用，在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员，通过启动转录不同的var基因变异体为抗原变异提供了分子基础。

A computer program for fast non-LTE analysis of interstellar line spectra

Abstract: The large quantity and high quality of modern radio and infrared line observations require efficient modeling techniques to infer physical and chemical parameters such as temperature, density, and molecular abundances. We present a computer program to calculate the intensities of atomic and molecular lines produced in a uniform medium, based on statistical equilibrium calculations involving collisional and radiative processes and including radiation from background sources. Optical depth effects are treated with an escape probability method. The program is available on the World Wide Web at http://www.sron.rug.nl/~vdtak/radex/index.shtml . The program makes use of molecular data files maintained in the Leiden Atomic and Molecular Database (LAMDA), which will continue to be improved and expanded. The performance of the program is compared with more approximate and with more sophisticated methods. An Appendix provides diagnostic plots to estimate physical parameters from line intensity ratios of commonly observed molecules. This program should form an important tool in analyzing observations from current and future radio and infrared telescopes. Note: Accepted by AA 18 A4 pages, 11 figures;

The Chemical Composition of Comets—Emerging Taxonomies and Natal Heritage

Abstract: Cometary nuclei contain the least modified material from the formative epoch of our planetary system, and their compositions reflect a range of processes experienced by material prior to its incorporation in the cometary nucleus. Dynamical models suggest that icy bodies in the main cometary reservoirs (Kuiper Belt, Oort Cloud) formed in a range of environments in the protoplanetary disk, and (for the Oort Cloud) even in disks surrounding neighboring stars of the Sun's birth cluster. Photometric and spectroscopic surveys of more than 100 comets have enabled taxonomic groupings based on free radical species and on crystallinity of rocky grains. Since 1985, new surveys have provided emerging taxonomies based on the abundance ratios of primary volatiles. More than 20 primary chemical species are now detected in bright comets. Measurements of nuclear spin ratios (in water, ammonia, and methane) and of isotopic ratios (D/H in water and HCN; 14N/15N in CN and HCN) have provided critical insights on factors affec...

The molecular universe

Abstract: Molecular absorption and emission bands dominate the visible, infrared, and submillimeter spectra of most objects with associated gas. These observations reveal a surprisingly rich array of molecular species and attest to a complex chemistry taking place in the harsh environment of the interstellar medium of galaxies. Molecules are truly everywhere and an important component of interstellar gas. This review surveys molecular observations in the various spectral windows and summarizes the chemical and physical processes involved in the formation and evolution of interstellar molecules. The rich organic inventory of space reflects the multitude of chemical processes involved that, on the one hand, build up molecules an atom at a time and, on the other hand, break down large molecules injected by stars to smaller fragments. Both this bottom-up and the trickle-down chemistry are reviewed. The emphasis is on understanding the characteristics of complex polycyclic aromatic hydrocarbon molecules and fullerenes and their role in chemistry as well as the intricate interaction of gas-phase ion-molecule and neutral-neutral reactions and the chemistry taking place on grain surfaces in dense clouds in setting the organic inventory of regions of star and planet formation and their implications for the chemical history of the Solar System. Many aspects of molecular astrophysics are illustrated with recent observations of the HIFI instrument on the Herschel Space Observatory.

The UMIST database for astrochemistry 2012

Abstract: We present the fifth release of the UMIST Database for Astrochemistry (UDfA). The new reaction network contains 6173 gas-phase reactions, involving 467 species, 47 of which are new to this release. We have updated rate coefficients across all reaction types. We have included 1171 new anion reactions and updated and reviewed all photorates. In addition to the usual reaction network, we also now include, for download, state-specific deuterated rate coefficients, deuterium exchange reactions and a list of surface binding energies for many neutral species. Where possible, we have referenced the original source of all new and existing data. We have tested the main reaction network using a dark cloud model and a carbon-rich circumstellar envelope model. We present and briefly discuss the results of these models.