M
Marine Dumousseau
Researcher at European Bioinformatics Institute
Publications - 16
Citations - 4542
Marine Dumousseau is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: Data curation & UniProt. The author has an hindex of 12, co-authored 16 publications receiving 3978 citations. Previous affiliations of Marine Dumousseau include California Institute of Technology & University of British Columbia.
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Journal ArticleDOI
The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases.
Sandra Orchard,Mais G. Ammari,Bruno Aranda,Lionel Breuza,Leonardo Briganti,Fiona Broackes-Carter,Nancy H. Campbell,Gayatri Chavali,Carol Chen,Noemi del-Toro,Margaret Duesbury,Marine Dumousseau,Eugenia Galeota,Ursula Hinz,Marta Iannuccelli,Sruthi Jagannathan,Rafael C. Jimenez,Jyoti Khadake,Astrid Lagreid,Luana Licata,Ruth C. Lovering,Birgit H M Meldal,Anna N. Melidoni,Mila Milagros,Daniele Peluso,Livia Perfetto,Pablo Porras,Arathi Raghunath,Sylvie Ricard-Blum,Bernd Roechert,Andre Stutz,Michael Tognolli,Kim Van Roey,Gianni Cesareni,Henning Hermjakob +34 more
TL;DR: All data manually curated by the MINT curators have been moved into the IntAct database at EMBL-EBI and are merged with the existing IntAct dataset.
Journal ArticleDOI
The IntAct molecular interaction database in 2012
Samuel Kerrien,Bruno Aranda,Lionel Breuza,Alan Bridge,Fiona Broackes-Carter,Carol Chen,Margaret Duesbury,Marine Dumousseau,M Feuermann,Ursula Hinz,Christine Jandrasits,Rafael C. Jimenez,Jyoti Khadake,Usha Mahadevan,Patrick Masson,Ivo Pedruzzi,Eric Pfeiffenberger,Pablo Porras,Arathi Raghunath,Bernd Roechert,Sandra Orchard,Henning Hermjakob +21 more
TL;DR: Two levels of curation are now available within the IntAct database, with both IMEx-level annotation and less detailed MIMIx-compatible entries currently supported.
Journal ArticleDOI
Protein interaction data curation: the International Molecular Exchange (IMEx) consortium
Sandra Orchard,Samuel Kerrien,Sara Abbani,Bruno Aranda,Jignesh Bhate,Shelby L. Bidwell,Alan Bridge,Leonardo Briganti,Fiona S. L. Brinkman,Gianni Cesareni,Andrew Chatr-aryamontri,Andrew Chatr-aryamontri,Emilie Chautard,Emilie Chautard,Carol Chen,Marine Dumousseau,Johannes B. Goll,Robert E. W. Hancock,Linda Hannick,Igor Jurisica,Jyoti Khadake,David J. Lynn,Usha Mahadevan,Livia Perfetto,Arathi Raghunath,Sylvie Ricard-Blum,Bernd Roechert,Lukasz Salwinski,Volker Stümpflen,Mike Tyers,Mike Tyers,Peter Uetz,Ioannis Xenarios,Ioannis Xenarios,Henning Hermjakob +34 more
TL;DR: The International Molecular Exchange consortium is an international collaboration between major public interaction data providers to share literature-curation efforts and make a nonredundant set of protein interactions available in a single search interface on a common website.
Journal ArticleDOI
BioModels: ten-year anniversary
Vijayalakshmi Chelliah,Nick Juty,Ishan Ajmera,Raza Ali,Marine Dumousseau,Mihai Glont,Michael Hucka,Gaël Jalowicki,Sarah M. Keating,Vincent Knight-Schrijver,Audald Lloret-Villas,Kedar Nath Natarajan,Jean-Baptiste Pettit,Nicolas Rodriguez,Michael Schubert,Sarala M. Wimalaratne,Yangyang Zhao,Henning Hermjakob,Nicolas Le Novère,Camille Laibe +19 more
TL;DR: BioModels as discussed by the authors is a repository of mathematical models of biological processes, which is used to verify both correspondence to the biological process that the model seeks to represent, and reproducibility of the simulation results as described in the corresponding peer-reviewed publication.
Journal ArticleDOI
PSICQUIC and PSISCORE: accessing and scoring molecular interactions
Bruno Aranda,Hagen Blankenburg,Samuel Kerrien,Fiona S. L. Brinkman,Arnaud Ceol,Emilie Chautard,Jose M. Dana,Javier De Las Rivas,Marine Dumousseau,Eugenia Galeota,Anna Gaulton,Johannes B. Goll,Robert E. W. Hancock,Ruth Isserlin,Rafael C. Jimenez,Jules Kerssemakers,Jyoti Khadake,David J. Lynn,Magali Michaut,Gavin O'Kelly,Keiichiro Ono,Sandra Orchard,Carlos Prieto,Sabry Razick,Olga Rigina,Lukasz Salwinski,Milan Simonovic,Sameer Velankar,Andrew G. Winter,Guanming Wu,Gary D. Bader,Gianni Cesareni,Ian Donaldson,David Eisenberg,Gerard J. Kleywegt,John P. Overington,Sylvie Ricard-Blum,Mike Tyers,Mario Albrecht,Henning Hermjakob +39 more
TL;DR: To study proteins in the context of a cellular system, it is essential that the molecules with which a protein interacts are identified and the functional consequence of each interaction is understood.