Mark Gerstein

TL;DR: The existence of potential primate-specific functional transcripts has demonstrated the limitation of previous genome comparison studies, which put too much emphasis on conservation between human and rodents and argues for the necessity of sequencing additional primate species to gain a better and more comprehensive understanding of the human genome.

TL;DR: This chapter presents two use cases, namely YeastHub and LinkHub, which demonstrate how to use the latest RDF database technology to build data warehouses that facilitate integration of genomic/proteomic data and identifiers.

TL;DR: A high-throughput method based on a novel gene expression analysis, RNA-Seq, is used to give a global picture of differential gene expression by primary human macrophages of 10 healthy donors infected in vitro with WNV.

TL;DR: A comparison of these 'normal' water simulations with a simulation of a simple, uncharged solvent highlights the importance of hydrogen bonding in structuring liquid water and further contrasts the molecular surface and the hydration surface.

TL;DR: This work uses a number of disparate features to classify the 6988 novel TARs-array expression profiles across cell lines and conditions, sequence composition, phylogenetic profiles (presence/absence of syntenic conservation across 17 species), and locations relative to genes.