M
Meg Pirrung
Researcher at University of Colorado Denver
Publications - 6
Citations - 30215
Meg Pirrung is an academic researcher from University of Colorado Denver. The author has contributed to research in topics: Metadata & Sequence motif. The author has an hindex of 6, co-authored 6 publications receiving 25199 citations. Previous affiliations of Meg Pirrung include University of Colorado Boulder.
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Journal ArticleDOI
QIIME allows analysis of high-throughput community sequencing data.
J. Gregory Caporaso,Justin Kuczynski,Jesse Stombaugh,Kyle Bittinger,Frederic D. Bushman,Elizabeth K. Costello,Noah Fierer,Antonio Gonzalez Peña,Julia K. Goodrich,Jeffrey I. Gordon,Gavin A. Huttley,Scott T. Kelley,Dan Knights,Jeremy E. Koenig,Ruth E. Ley,Catherine A. Lozupone,Daniel McDonald,Brian D. Muegge,Meg Pirrung,Jens Reeder,Joel Sevinsky,Peter J. Turnbaugh,William A. Walters,Jeremy Widmann,Tanya Yatsunenko,Jesse R. Zaneveld,Rob Knight,Rob Knight +27 more
TL;DR: An overview of the analysis pipeline and links to raw data and processed output from the runs with and without denoising are provided.
Journal ArticleDOI
EMPeror: a tool for visualizing high-throughput microbial community data
TL;DR: Here the authors present EMPeror, an open source and web browser enabled tool with a versatile command line interface that allows researchers to perform rapid exploratory investigations of 3D visualizations of microbial community data, such as the widely used principal coordinates plots.
Journal ArticleDOI
Evidence for a persistent microbial seed bank throughout the global ocean
Sean M. Gibbons,J. Gregory Caporaso,J. Gregory Caporaso,Meg Pirrung,Dawn Field,Rob Knight,Jack A. Gilbert,Jack A. Gilbert +7 more
TL;DR: A deep bacterial community characterization from one site in the English Channel with 356 datasets from the International Census of Marine Microbes taken from around the globe suggests the marine biosphere maintains a previously undetected, persistent microbial seed bank.
Journal ArticleDOI
Replenishing our defensive microbes.
Luke K. Ursell,Will Van Treuren,Jessica L. Metcalf,Meg Pirrung,Andrew T. Gewirtz,Rob Knight,Rob Knight +6 more
TL;DR: Beneficial microbes associated with pathogen resistance are reviewed, highlighting the emerging role of complex microbial communities in protecting against disease and prospects for reintroducing or encouraging the growth of beneficial microbes to promote the restoration of healthy microbial ecosystems.
Journal ArticleDOI
Identifying novel sequence variants of RNA 3D motifs
TL;DR: New probabilistic models for 3D motif sequences based on hybrid Stochastic Context-Free Grammars and Markov Random Fields and SCFG/MRF are developed and validated and are available free for download.