M
Mikkel-Holger S. Sinding
Researcher at Trinity College, Dublin
Publications - 91
Citations - 2798
Mikkel-Holger S. Sinding is an academic researcher from Trinity College, Dublin. The author has contributed to research in topics: Population & Ancient DNA. The author has an hindex of 25, co-authored 74 publications receiving 1805 citations. Previous affiliations of Mikkel-Holger S. Sinding include University of Greenland & University of Copenhagen.
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Journal ArticleDOI
Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing
Sarah Siu Tze Mak Mak,Shyam Gopalakrishnan,Christian Carøe,Christian Carøe,Chunyu Geng,Shanlin Liu,Mikkel-Holger S. Sinding,Mikkel-Holger S. Sinding,Mikkel-Holger S. Sinding,Lukas F. K. Kuderna,Wenwei Zhang,Fu Shujin,Filipe G. Vieira,Mietje Germonpré,Hervé Bocherens,Sergey Fedorov,Bent O. Petersen,Thomas Sicheritz-Pontén,Tomas Marques-Bonet,Tomas Marques-Bonet,Guojie Zhang,Hui Jiang,M. Thomas P. Gilbert,M. Thomas P. Gilbert,M. Thomas P. Gilbert +24 more
TL;DR: The observations suggest that the BGISEQ-500 holds the potential to represent a valid and potentially valuable alternative platform for palaeogenomic data generation that is worthy of future exploration by those interested in the sequencing and analysis of degraded DNA.
Journal ArticleDOI
Dense sampling of bird diversity increases power of comparative genomics.
Shaohong Feng,Josefin Stiller,Yuan Deng,Joel Armstrong,Joel Armstrong,Qi Fang,Andrew Hart Reeve,Duo Xie,Guangji Chen,Chunxue Guo,Brant C. Faircloth,Bent O. Petersen,Zongji Wang,Qi Zhou,Qi Zhou,Mark Diekhans,Mark Diekhans,Wanjun Chen,Sergio Andreu-Sánchez,Ashot Margaryan,Ashot Margaryan,Jason T. Howard,Carole A. Parent,George Pacheco,Mikkel-Holger S. Sinding,Lara Puetz,Emily Cavill,Ângela M. Ribeiro,Leopold Eckhart,Jon Fjeldså,Peter A. Hosner,Robb T. Brumfield,Les Christidis,Mads F. Bertelsen,Thomas Sicheritz-Pontén,Dieter Thomas Tietze,Bruce C. Robertson,Gang Song,Gerald Borgia,Santiago Claramunt,Santiago Claramunt,Irby J. Lovette,Saul J. Cowen,Peter Njoroge,John P. Dumbacher,Oliver A. Ryder,Jérôme Fuchs,Michael Bunce,David W. Burt,Joel Cracraft,Guanliang Meng,Shannon J. Hackett,Peter G. Ryan,Knud A. Jønsson,Ian G. Jamieson,Rute R. da Fonseca,Edward L. Braun,Peter Houde,Siavash Mirarab,Alexander Suh,Alexander Suh,Bengt Hansson,Suvi Ponnikas,Hanna Sigeman,Martin Stervander,Martin Stervander,Paul B. Frandsen,Paul B. Frandsen,Henriette van der Zwan,Rencia van der Sluis,Carina Visser,Christopher N. Balakrishnan,Andrew G. Clark,John W. Fitzpatrick,Reed Bowman,Nancy F. Chen,Alison Cloutier,Timothy B. Sackton,Scott V. Edwards,Dustin J. Foote,Subir B. Shakya,Frederick H. Sheldon,Alain Vignal,André E. R. Soares,Beth Shapiro,Jacob González-Solís,Joan Ferrer-Obiol,Julio Rozas,Marta Riutort,Anna Tigano,Anna Tigano,Vicki L. Friesen,Love Dalén,Araxi O. Urrutia,Araxi O. Urrutia,Tamás Székely,Yang Liu,Michael G. Campana,André Corvelo,Robert C. Fleischer,Kim Rutherford,Neil J. Gemmell,Nicolas Dussex,Nicolas Dussex,Henrik Mouritsen,Nadine Thiele,Kira E. Delmore,Kira E. Delmore,Miriam Liedvogel,Andre Franke,Marc P. Hoeppner,Oliver Krone,Adam M. Fudickar,Borja Milá,Ellen D. Ketterson,Andrew E. Fidler,Guillermo Friis,Ángela M. Parody-Merino,Phil F. Battley,Murray P. Cox,Nicholas Costa Barroso Lima,Francisco Prosdocimi,Thomas L. Parchman,Barney A. Schlinger,Bette A. Loiselle,John G. Blake,Haw Chuan Lim,Haw Chuan Lim,Lainy B. Day,Matthew J. Fuxjager,Maude W. Baldwin,Michael J. Braun,Morgan Wirthlin,Rebecca B. Dikow,T. Brandt Ryder,Glauco Camenisch,Lukas F. Keller,Jeffrey M. DaCosta,Mark E. Hauber,Matthew I. M. Louder,Christopher C. Witt,Jimmy A. McGuire,Joann Mudge,Libby C. Megna,Matthew D. Carling,Biao Wang,Scott A. Taylor,Glaucia Del-Rio,Alexandre Aleixo,Ana Tereza Ribeiro de Vasconcelos,Claudio V. Mello,Jason T. Weir,Jason T. Weir,David Haussler,David Haussler,Qiye Li,Huanming Yang,Jian Wang,Fumin Lei,Carsten Rahbek,M. Thomas P. Gilbert,M. Thomas P. Gilbert,Gary R. Graves,Gary R. Graves,Erich D. Jarvis,Erich D. Jarvis,Erich D. Jarvis,Benedict Paten,Benedict Paten,Guojie Zhang +169 more
TL;DR: The densely sampled alignment provides a single-base-pair map of selection, has more than doubled the fraction of bases that are confidently predicted to be under conservation and reveals extensive patterns of weak selection in predominantly non-coding DNA.
Journal ArticleDOI
Single-tube library preparation for degraded DNA
Christian Carøe,Christian Carøe,Shyam Gopalakrishnan,Lasse Vinner,Sarah S.T. Mak,Mikkel-Holger S. Sinding,José Alfredo Samaniego,Nathan Wales,Thomas Sicheritz-Pontén,M. Thomas P. Gilbert +9 more
TL;DR: Four Illumina library preparation protocols are compared, including two “single‐tube” methods developed for this study with the explicit aim of improving data quality and reducing preparation time and expenses, and single‐tube protocols increase library complexity, yield more reads that map uniquely to the reference genome, reduce processing time, and may decrease laboratory costs by 90%.
Journal ArticleDOI
Current state of knowledge on biological effects from contaminants on arctic wildlife and fish
Rune Dietz,Robert J. Letcher,Jean-Pierre Desforges,Igor Eulaers,Christian Sonne,Simon Wilson,Emilie Andersen-Ranberg,Niladri Basu,Benjamin D. Barst,Jan Ove Bustnes,Jenny Bytingsvik,Tomasz Maciej Ciesielski,Tomasz Maciej Ciesielski,Paul E. Drevnick,Paul E. Drevnick,Geir Wing Gabrielsen,Ane Haarr,Ketil Hylland,Bjørn Munro Jenssen,Bjørn Munro Jenssen,Bjørn Munro Jenssen,Milton Levin,Melissa A. McKinney,Rasmus Dyrmose Nørregaard,Kathrine Eggers Pedersen,Jennifer F. Provencher,Bjarne Styrishave,Sabrina Tartu,Jon Aars,Joshua T. Ackerman,Aqqalu Rosing-Asvid,Robert T. Barrett,Anders Bignert,Erik W. Born,Marsha Branigan,Birgit M. Braune,Colleen E. Bryan,Maria Dam,Collin A. Eagles-Smith,Marlene S. Evans,Thomas J. Evans,Aaron T. Fisk,Mary Gamberg,Kim Gustavson,C. Alex Hartman,Björn Helander,Mark P. Herzog,Paul F. Hoekstra,Magali Houde,Katrin S. Hoydal,Allyson K. Jackson,John R. Kucklick,Elisabeth Lie,Lisa L. Loseto,Mark L. Mallory,Cecilie Miljeteig,Anders Mosbech,Derek C. G. Muir,Sanna Túni Nielsen,Elizabeth Peacock,Sara Pedro,Sarah H. Peterson,Anuschka Polder,Frank Rigét,Pat Roach,Halvor Saunes,Mikkel-Holger S. Sinding,Janneche Utne Skaare,Jens Søndergaard,Garry B. Stenson,Gary A. Stern,Gabriele Treu,Stacy S. Schuur,Gísli A. Víkingsson +73 more
TL;DR: This assessment made use of risk quotient calculations to summarize the cumulative effects of different OHC classes and mercury for which critical body burdens can be estimated for wildlife across the Arctic.
Journal ArticleDOI
The evolutionary history of dogs in the Americas.
Máire Ní Leathlobhair,Angela R. Perri,Angela R. Perri,Evan K. Irving-Pease,Kelsey E. Witt,Anna Linderholm,Anna Linderholm,James Haile,James Haile,Ophélie Lebrasseur,Carly Ameen,Jeffrey P. Blick,Adam R. Boyko,Selina Brace,Yahaira Nunes Cortes,Susan J. Crockford,Alison Devault,Evangelos A. Dimopoulos,Morley Eldridge,Jacob Enk,Shyam Gopalakrishnan,Kevin Gori,Vaughan Grimes,Eric J. Guiry,Anders J. Hansen,Anders J. Hansen,Ardern Hulme-Beaman,Ardern Hulme-Beaman,John R. Johnson,Andrew Kitchen,Aleksei Kasparov,Young Mi Kwon,Pavel A. Nikolskiy,Carlos Peraza Lope,Aurélie Manin,Terrance J. Martin,Michael C. Meyer,Kelsey Noack Myers,Mark Omura,Jean Marie Rouillard,Elena Y. Pavlova,Elena Y. Pavlova,Paul W. Sciulli,Mikkel-Holger S. Sinding,Mikkel-Holger S. Sinding,Mikkel-Holger S. Sinding,Andrea Strakova,Varvara V. Ivanova,Chris Widga,Eske Willerslev,Vladimir V. Pitulko,Ian Barnes,M. Thomas P. Gilbert,M. Thomas P. Gilbert,Keith Dobney,Keith Dobney,Ripan S. Malhi,Elizabeth P. Murchison,Greger Larson,Laurent A. F. Frantz,Laurent A. F. Frantz +60 more
TL;DR: The analysis indicates that American dogs were not derived from North American wolves but likely originated from a Siberian ancestor, and form a monophyletic lineage that likely originated in Siberia and dispersed into the Americas alongside people.