Showing papers by "Ming-Yang Kao published in 2003"
TL;DR: The problem of finding a plane embedding of a planar graph if any exists, such that, for each vertex in the embedding, there is a face whose boundary contains at least one vertex from each set in CCi as discussed by the authors.
Abstract: Given a planar graph $\Ggg$ and a sequence ${\CC}_1,\ldots,{\CC}_q$, where each ${\CC}_i$ is a family of vertex subsets of $\Ggg$, we wish to find a plane embedding of $\Ggg$, if any exists, such that, for each $i\in\{1,\ldots,q\}$, there is a face Fi in the embedding whose boundary contains at least one vertex from each set in CCi. This problem has applications in the recovery of topological information from geographical data and the design of constrained layouts in VLSI. Let $\inputsize$ be the input size, i.e., the total number of vertices and edges in $\Ggg$ and the families CCi, counting multiplicity. We show that this problem is NP-complete in general. We also show that it is solvable in $O(\inputsize\log \inputsize)$ time for the special case in which, for each input family CCi, each set in CCi induces a connected subgraph of the input graph $\Ggg$. Note that the classical problem of simply finding a planar embedding is a further special case of this case with q=0. Therefore, the processing of the additional constraints CC1, . . .,CCq incurs only a logarithmic factor of overhead.
4 citations
TL;DR: In this article, the authors presented a new approach called the enhanced double digest problem (EDD), which can be solved in linear time in certain theoretically interesting cases and is shown to be NP-hard.
Abstract: The double digest problem is a common NP-hard approach to constructing physical maps of DNA sequences. This paper presents a new approach called the enhanced double digest problem. Although this new problem is also NP-hard, it can be solved in linear time in certain theoretically interesting cases.
3 citations