Musa H. Asyali

Bio: Musa H. Asyali is an academic researcher from Zirve University. The author has contributed to research in topics: Image segmentation & Laguerre polynomials. The author has an hindex of 20, co-authored 54 publications receiving 1554 citations. Previous affiliations of Musa H. Asyali include Abdullah Gül University & Ege University.

Sample size requirements for the design of reliability study: review and new results

Abstract: The reliability of continuous or binary outcome measures is usually assessed by estimation of the intraclass correlation coefficient (ICC). A crucial step for this purpose is the determination of the required sample size. In this review, we discuss the contributions made in this regard and derive the optimal allocation for the number of subjects k and the number of repeated measurements n that minimize the variance of the estimated ICC. Cost constraints are discussed for both normally and non-normally distributed responses, with emphasis on the case of dichotomous assessments. Tables showing optimal choices of k and n are given along with the guidelines for the efficient design of reliability studies.

Sleep stage and obstructive apneaic epoch classification using single-lead ECG

Abstract: Polysomnography (PSG) is used to define physiological sleep and different physiological sleep stages, to assess sleep quality and diagnose many types of sleep disorders such as obstructive sleep apnea. However, PSG requires not only the connection of various sensors and electrodes to the subject but also spending the night in a bed that is different from the subject's own bed. This study is designed to investigate the feasibility of automatic classification of sleep stages and obstructive apneaic epochs using only the features derived from a single-lead electrocardiography (ECG) signal. For this purpose, PSG recordings (ECG included) were obtained during the night's sleep (mean duration 7 hours) of 17 subjects (5 men) with ages between 26 and 67. Based on these recordings, sleep experts performed sleep scoring for each subject. This study consisted of the following steps: (1) Visual inspection of ECG data corresponding to each 30-second epoch, and selection of epochs with relatively clean signals, (2) beat-to-beat interval (RR interval) computation using an R-peak detection algorithm, (3) feature extraction from RR interval values, and (4) classification of sleep stages (or obstructive apneaic periods) using one-versus-rest approach. The features used in the study were the median value, the difference between the 75 and 25 percentile values, and mean absolute deviations of the RR intervals computed for each epoch. The k-nearest-neighbor (kNN), quadratic discriminant analysis (QDA), and support vector machines (SVM) methods were used as the classification tools. In the testing procedure 10-fold cross-validation was employed. QDA and SVM performed similarly well and significantly better than kNN for both sleep stage and apneaic epoch classification studies. The classification accuracy rates were between 80 and 90% for the stages other than non-rapid-eye-movement stage 2. The accuracies were 60 or 70% for that specific stage. In five obstructive sleep apnea (OSA) patients, the accurate apneaic epoch detection rates were over 89% for QDA and SVM. This study, in general, showed that RR-interval based classification, which requires only single-lead ECG, is feasible for sleep stage and apneaic epoch determination and can pave the road for a simple automatic classification system suitable for home-use.

Gene Expression Profile Classification: A Review

Abstract: In this review, we have discussed the class-prediction and discovery methods that are applied to gene expression data, along with the implications of the findings. We attempted to present a unified approach that considers both class-prediction and class-discovery. We devoted a substantial part of this review to an overview of pattern classification/recognition methods and discussed important issues such as preprocessing of gene expression data, curse of dimensionality, feature extraction/selection, and measuring or estimating classifier performance. We discussed and summarized important properties such as generalizability (sensitivity to overtraining), built-in feature selection, ability to report prediction strength, and transparency (ease of understanding of the operation) of different class-predictor design approaches to provide a quick and concise reference. We have also covered the topic of biclustering, which is an emerging clustering method that processes the entries of the gene expression data matrix in both gene and sample directions simultaneously, in detail.

Feedback Network Controls Photoreceptor Output at the Layer of First Visual Synapses in Drosophila

Abstract: At the layer of first visual synapses, information from photoreceptors is processed and transmitted towards the brain. In fly compound eye, output from photoreceptors (R1–R6) that share the same visual field is pooled and transmitted via histaminergic synapses to two classes of interneuron, large monopolar cells (LMCs) and amacrine cells (ACs). The interneurons also feed back to photoreceptor terminals via numerous ligand-gated synapses, yet the significance of these connections has remained a mystery. We investigated the role of feedback synapses by comparing intracellular responses of photoreceptors and LMCs in wild-type Drosophila and in synaptic mutants, to light and current pulses and to naturalistic light stimuli. The recordings were further subjected to rigorous statistical and information-theoretical analysis. We show that the feedback synapses form a negative feedback loop that controls the speed and amplitude of photoreceptor responses and hence the quality of the transmitted signals. These results highlight the benefits of feedback synapses for neural information processing, and suggest that similar coding strategies could be used in other nervous systems.

Image Processing with Matlab: Applications in Medicine and Biology

Abstract: Medical Imaging Systems Fundamental Tools for Image Processing and Analysis Probability Theory for Stochastic Modeling of Images Two-Dimensional Fourier Transform Nonlinear Diffusion Filtering Intensity-Based Image Segmentation Image Segmentation by Markov Random Field Modeling Deformable Models Image Analysis Application 1: Quantification of Green Fluorescent Protein eXpression in Live Cells: ProXcell Application 2: Calculation of Performance Parameters of Gamma Cameras and SPECT Systems Application 3: Analysis of Islet Cells Using Automated Color Image Analysis Appendix A: Notation Appendix B: Working with DICOM Images Appendix C: Medical Image Processing Toolbox Appendix D: Description of Image Data

Histamine in the Nervous System

Abstract: Histamine is a transmitter in the nervous system and a signaling molecule in the gut, the skin, and the immune system. Histaminergic neurons in mammalian brain are located exclusively in the tuberomamillary nucleus of the posterior hypothalamus and send their axons all over the central nervous system. Active solely during waking, they maintain wakefulness and attention. Three of the four known histamine receptors and binding to glutamate NMDA receptors serve multiple functions in the brain, particularly control of excitability and plasticity. H1 and H2 receptor-mediated actions are mostly excitatory; H3 receptors act as inhibitory auto- and heteroreceptors. Mutual interactions with other transmitter systems form a network that links basic homeostatic and higher brain functions, including sleep-wake regulation, circadian and feeding rhythms, immunity, learning, and memory in health and disease.