N
Naigong Zhang
Researcher at National Institutes of Health
Publications - 4
Citations - 10831
Naigong Zhang is an academic researcher from National Institutes of Health. The author has contributed to research in topics: Conserved Domain Database & Protein domain. The author has an hindex of 4, co-authored 4 publications receiving 8626 citations.
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NCBI GEO: archive for functional genomics data sets—update
Tanya Barrett,Stephen E. Wilhite,Pierre Ledoux,Carlos Evangelista,Irene F. Kim,Maxim Tomashevsky,Kimberly A. Marshall,Katherine Phillippy,Patti M. Sherman,Michelle Holko,Andrey Yefanov,Hye Seung Lee,Naigong Zhang,Cynthia L. Robertson,Nadezhda Serova,Sean Davis,Alexandra Soboleva +16 more
TL;DR: The Gene Expression Omnibus is an international public repository for high-throughput microarray and next-generation sequence functional genomic data sets submitted by the research community and supports archiving of raw data, processed data and metadata which are indexed, cross-linked and searchable.
Journal ArticleDOI
CDD: a Conserved Domain Database for the functional annotation of proteins
Aron Marchler-Bauer,Shennan Lu,John B. Anderson,Farideh Chitsaz,Myra K. Derbyshire,Carol DeWeese-Scott,Jessica H. Fong,Lewis Y. Geer,Renata C. Geer,Noreen R. Gonzales,Marc Gwadz,David I. Hurwitz,John D. Jackson,Zhaoxi Ke,Christopher J. Lanczycki,Fu-Ping Lu,Gabriele H. Marchler,Mikhail Mullokandov,Marina V. Omelchenko,Cynthia L. Robertson,James S. Song,Narmada Thanki,Roxanne A. Yamashita,Dachuan Zhang,Naigong Zhang,Chanjuan Zheng,Stephen H. Bryant +26 more
TL;DR: NCBI’s Conserved Domain Database (CDD) is a resource for the annotation of protein sequences with the location of conserved domain footprints, and functional sites inferred from these footprints.
Journal ArticleDOI
CDD: specific functional annotation with the Conserved Domain Database.
Aron Marchler-Bauer,John B. Anderson,Farideh Chitsaz,Myra K. Derbyshire,Carol DeWeese-Scott,Jessica H. Fong,Lewis Y. Geer,Renata C. Geer,Noreen R. Gonzales,Marc Gwadz,Siqian He,David I. Hurwitz,John D. Jackson,Zhaoxi Ke,Christopher J. Lanczycki,Cynthia A. Liebert,Chunlei Liu,Fu-er Lu,Shennan Lu,Gabriele H. Marchler,Mikhail Mullokandov,James S. Song,Asba Tasneem,Narmada Thanki,Roxanne A. Yamashita,Dachuan Zhang,Naigong Zhang,Stephen H. Bryant +27 more
TL;DR: NCBI's Conserved Domain Database is a collection of multiple sequence alignments and derived database search models, which represent protein domains conserved in molecular evolution, and provides annotation of domain footprints and conserved functional sites on protein sequences.
Journal ArticleDOI
MMDB: annotating protein sequences with Entrez's 3D-structure database.
Yanli Wang,Kenneth J. Addess,Jie Chen,Lewis Y. Geer,Jane He,Siqian He,Shennan Lu,Thomas Madej,Aron Marchler-Bauer,Paul A. Thiessen,Naigong Zhang,Stephen H. Bryant +11 more
TL;DR: An annotation service that combines some of these tools automatically, Entrez's ‘Related Structure’ links, that presents 3D views mapping sequence residues onto all 3D structures available in MMDB.