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Nicole R. Allen
Researcher at Broad Institute
Publications - 4
Citations - 3193
Nicole R. Allen is an academic researcher from Broad Institute. The author has contributed to research in topics: Chromosome 19 & Chromosome 4. The author has an hindex of 3, co-authored 4 publications receiving 3008 citations. Previous affiliations of Nicole R. Allen include Virginia Tech & Uniformed Services University of the Health Sciences.
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Journal ArticleDOI
Genome sequence, comparative analysis and haplotype structure of the domestic dog
Kerstin Lindblad-Toh,Claire M. Wade,Claire M. Wade,Tarjei S. Mikkelsen,Tarjei S. Mikkelsen,Elinor K. Karlsson,Elinor K. Karlsson,David B. Jaffe,Michael Kamal,Michele Clamp,Jean L. Chang,Edward J. Kulbokas,Michael C. Zody,Evan Mauceli,Xiaohui Xie,Matthew Breen,Robert K. Wayne,Elaine A. Ostrander,Chris P. Ponting,Francis Galibert,Douglas Smith,Pieter J. deJong,Ewen F. Kirkness,Pablo Alvarez,Tara Biagi,William Brockman,Jonathan Butler,Chee-Wye Chin,April Cook,James Cuff,Mark J. Daly,Mark J. Daly,David DeCaprio,Sante Gnerre,Manfred Grabherr,Manolis Kellis,Michael Kleber,Carolyne Bardeleben,Leo Goodstadt,Andreas Heger,Christophe Hitte,Lisa Kim,Klaus-Peter Koepfli,Heidi G. Parker,John P. Pollinger,Stephen M. J. Searle,Nathan B. Sutter,Rachael Thomas,Caleb Webber,Jennifer Baldwin,Jennifer Baldwin,Adal Abebe,Amr Abouelleil,Lynne Aftuck,Mostafa Ait-zahra,Tyler Aldredge,Nicole R. Allen,Peter An,Scott Anderson,Claudel Antoine,Harindra Arachchi,Ali Aslam,Laura Ayotte,Pasang Bachantsang,Andrew Barry,Tashi Bayul,Mostafa Benamara,Aaron M. Berlin,Daniel Bessette,Berta Blitshteyn,Toby Bloom,Jason Blye,Leonid Boguslavskiy,Claude Bonnet,Boris Boukhgalter,Adam Brown,Patrick Cahill,Nadia Calixte,Jody Camarata,Yama Cheshatsang,Jeffrey Chu,Mieke Citroen,Alville Collymore,Patrick Cooke,Tenzin Dawoe,Riza M. Daza,Karin Decktor,Stuart DeGray,Norbu Dhargay,Kimberly Dooley,Kathleen Dooley,Passang Dorje,Kunsang Dorjee,Lester Dorris,Noah Duffey,Alan Dupes,Osebhajajeme Egbiremolen,Richard Elong,Jill Falk,Abderrahim Farina,Susan Faro,Diallo Ferguson,Patricia Ferreira,Sheila A. Fisher,Michael Fitzgerald,Karen Foley,Chelsea D. Foley,Alicia Franke,Dennis C. Friedrich,Diane Gage,Manuel Garber,Gary Gearin,Georgia Giannoukos,Tina Goode,Audra Goyette,Joseph Graham,Edward Grandbois,Kunsang Gyaltsen,Nabil Hafez,Daniel S. Hagopian,Birhane Hagos,Jennifer Ruth Sadler Hall,Claire M. Healy,Ryan Hegarty,Tracey Honan,Andrea Horn,Nathan Houde,Leanne Hughes,Leigh Anne Hunnicutt,M. Husby,Benjamin Jester,Charlien Jones,Asha Kamat,Ben Kanga,Cristyn Kells,Dmitry Khazanovich,Alix Chinh Kieu,Peter Kisner,Mayank Kumar,Krista Lance,Thomas E. Landers,Marcia Lara,William H. Lee,Jean-Pierre Leger,Niall J. Lennon,Lisa Leuper,Sarah LeVine,Jinlei Liu,Xiaohong Liu,Yeshi Lokyitsang,Tashi Lokyitsang,Annie Lui,Jan Macdonald,John E. Major,Richard Marabella,Kebede Maru,Charles Matthews,Susan McDonough,Teena Mehta,James Meldrim,Alexandre Melnikov,Louis Meneus,Atanas Mihalev,Tanya Mihova,Karen Hughes Miller,Rachel Mittelman,Valentine Mlenga,Leonidas Mulrain,Glen Munson,Adam Navidi,Jerome Naylor,Tuyen T. Nguyen,Nga Nguyen,Cindy Nguyen,Thu Nguyen,Robert Nicol,Nyima Norbu,Choe Norbu,Nathaniel Novod,Tenchoe Nyima,Peter Olandt,Barry O'Neill,Keith O'Neill,Sahal Osman,Lucien Oyono,Christopher Patti,Danielle Perrin,Pema Phunkhang,Fritz Pierre,Margaret Priest,Anthony Rachupka,Sujaa Raghuraman,Rayale Rameau,Verneda Ray,Christina Raymond,Filip Rege,Cecil Rise,Julie Rogers,Peter Rogov,Julie Sahalie,Sampath Settipalli,Ted Sharpe,Terrance Shea,Mechele Sheehan,Ngawang Sherpa,Jianying Shi,Diana M. Shih,Jessie Sloan,Cherylyn Smith,Todd Sparrow,John Stalker,Nicole Stange-Thomann,Sharon Stavropoulos,Catherine Stone,Sabrina M. Stone,Sean M. Sykes,Pierre Tchuinga,Pema Tenzing,Senait Tesfaye,Dawa Thoulutsang,Yama Thoulutsang,Kerri Topham,Ira Topping,Tsamla Tsamla,Helen Vassiliev,Vijay Venkataraman,Andy Vo,Tsering Wangchuk,Tsering Wangdi,Michael Weiand,Jane E. Wilkinson,Adam Wilson,Shailendra Yadav,Shuli Yang,Xiaoping Yang,Geneva Young,Qing Yu,Joanne Zainoun,Lisa Zembek,Andrew Zimmer,Eric S. Lander,Eric S. Lander +241 more
TL;DR: A high-quality draft genome sequence of the domestic dog is reported, together with a dense map of single nucleotide polymorphisms (SNPs) across breeds, to shed light on the structure and evolution of genomes and genes.
Journal ArticleDOI
The Genome of M. Acetivorans Reveals Extensive Metabolic and Physiological Diversity
James E. Galagan,Chad Nusbaum,Alice Roy,Matthew G. Endrizzi,Matthew G. Endrizzi,Matthew G. Endrizzi,Pendexter Macdonald,Pendexter Macdonald,Pendexter Macdonald,William Fitzhugh,Sarah E. Calvo,Reinhard Engels,Serge Smirnov,Deven Atnoor,Adam Brown,Nicole R. Allen,Nicole R. Allen,Nicole R. Allen,Jerome Naylor,Nicole Stange-Thomann,Kurt DeArellano,Robin Johnson,Lauren Linton,Paul A. McEwan,Kevin McKernan,Jessica A. Talamas,Andrea Tirrell,Andrea Tirrell,Wenjuan Ye,Wenjuan Ye,Andrew Zimmer,Robert D. Barber,Isaac K. O. Cann,David E. Graham,David A. Grahame,Adam M. Guss,Reiner Hedderich,Cheryl Ingram-Smith,Cheryl Ingram-Smith,Cheryl Ingram-Smith,H. Craig Kuettner,Joseph A. Krzycki,Joseph A. Krzycki,John A. Leigh,Weixi Li,Jinfeng Liu,Biswarup Mukhopadhyay,John N. Reeve,Kerry S. Smith,Timothy A. Springer,Timothy A. Springer,Timothy A. Springer,Lowell Umayam,Owen White,Robert H. White,Everly Conway de Macario,Everly Conway de Macario,James G. Ferry,Ken F. Jarrell,Ken F. Jarrell,Hua Jing,Hua Jing,Hua Jing,Alberto J.L. Macario,Ian T. Paulsen,Ian T. Paulsen,Ian T. Paulsen,Matthew A. Pritchett,Kevin R. Sowers,Ronald V. Swanson,Steven H. Zinder,Steven H. Zinder,Eric S. Lander,Eric S. Lander,Eric S. Lander,William W. Metcalf,Bruce W. Birren +76 more
TL;DR: The complete genome sequence of an acetate-utilizing methanogen, Methanosarcina acetivorans C2A, is reported, which indicates the likelihood of undiscovered natural energy sources for methanogenesis, whereas the presence of single-subunit carbon monoxide dehydrogenases raises the possibility of nonmethanogenic growth.
Journal ArticleDOI
DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage
Michael C. Zody,Manuel Garber,David J. Adams,Ted Sharpe,Jennifer Harrow,James R. Lupski,Christine Nicholson,S. Searle,Laurens G. Wilming,Sarah Young,Amr Abouelleil,Nicole R. Allen,Weimin Bi,Toby Bloom,Mark L. Borowsky,Boris Bugalter,Jonathan Butler,Jean L. Chang,Chao-Kung Chen,April Cook,Benjamin Corum,Christina A. Cuomo,Pieter J. de Jong,David DeCaprio,Ken Dewar,Ken Dewar,Michael Fitzgerald,James G. R. Gilbert,Richard Gibson,Sante Gnerre,Steven A. Goldstein,Darren Grafham,Russell J. Grocock,Nabil Hafez,Daniel S. Hagopian,E. Hart,Catherine Hosage Norman,Sean Humphray,David B. Jaffe,Matthew C. Jones,Michael Kamal,Varsha K. Khodiyar,Kurt LaButti,Gavin K. Laird,Jessica A. Lehoczky,Xiaohong Liu,Tashi Lokyitsang,Jane E. Loveland,Annie Lui,Pendexter Macdonald,John E. Major,John E. Major,Lucy Matthews,Evan Mauceli,Steven A. McCarroll,Atanas Mihalev,Jonathan M. Mudge,Cindy Nguyen,Robert Nicol,Sinéad B. O'Leary,Kazutoyo Osoegawa,David C. Schwartz,Charles Shaw-Smith,Pawel Stankiewicz,Charles A. Steward,David Swarbreck,Vijay Venkataraman,Charles A. Whittaker,Charles A. Whittaker,Xiaoping Yang,Andrew Zimmer,Allan Bradley,Tim Hubbard,Bruce W. Birren,Jane Rogers,Eric S. Lander,Chad Nusbaum +76 more
TL;DR: Examination of the main classes of duplicated segments provides insight into the dynamics underlying expansion of chromosome-specific, low-copy repeats in the human genome.
Journal ArticleDOI
Corrigendum: DNA sequence and analysis of human chromosome 18
Chad Nusbaum,Michael C. Zody,Mark L. Borowsky,Michael Kamal,Chinnappa D. Kodira,Todd D. Taylor,Charles Whittaker,Jean L. Chang,Christina A. Cuomo,Ken Dewar,Michael Fitzgerald,Xiaoping Yang,Amr Abouelleil,Nicole R. Allen,Scott F. Anderson,Toby Bloom,Boris Bugalter,Jonathan Butler,April Cook,David DeCaprio,Reinhard Engels,Manuel Garber,Andreas Gnirke,Nabil Hafez,Jennifer L. Hall,Catherine Hosage Norman,Takehiko Itoh,David B. Jaffe,Yoko Kuroki,Jessica A. Lehoczky,Annie Lui,Pendexter Macdonald,Evan Mauceli,Tarjei S. Mikkelsen,Jerome Naylor,Robert Nicol,Cindy Nguyen,Hideki Noguchi,Sinéad B. O'Leary,Keith O'Neill,Bruno Piqani,Cherylyn Smith,Jessica A. Talamas,Kerri Topham,Yasushi Totoki,Atsushi Toyoda,H Wain,Sarah Young,Qiandong Zeng,Andrew Zimmer,Asao Fujiyama,Masahira Hattori,Bruce W. Birren,Yoshiyuki Sakaki,Eric S. Lander +54 more
TL;DR: The name of Keith O'Neill was accidentally omitted from the published author list as discussed by the authors, and he is at the first affiliation in the address list, which is the only known affiliation of an author in the list.