Noah J. Planavsky

Bio: Noah J. Planavsky is an academic researcher from Yale University. The author has contributed to research in topics: Authigenic & Geology. The author has an hindex of 57, co-authored 211 publications receiving 13039 citations. Previous affiliations of Noah J. Planavsky include Woods Hole Oceanographic Institution & California Institute of Technology.

The rise of oxygen in Earth’s early ocean and atmosphere

Abstract: The rapid increase of carbon dioxide concentration in Earth’s modern atmosphere is a matter of major concern. But for the atmosphere of roughly two-and-half billion years ago, interest centres on a different gas: free oxygen (O2) spawned by early biological production. The initial increase of O2 in the atmosphere, its delayed build-up in the ocean, its increase to near-modern levels in the sea and air two billion years later, and its cause-and-effect relationship with life are among the most compelling stories in Earth’s history.

The ketone metabolite β-hydroxybutyrate blocks NLRP3 inflammasome–mediated inflammatory disease

Abstract: The ketone bodies β-hydroxybutyrate (BHB) and acetoacetate (AcAc) support mammalian survival during states of energy deficit by serving as alternative sources of ATP. BHB levels are elevated by starvation, caloric restriction, high-intensity exercise, or the low-carbohydrate ketogenic diet. Prolonged fasting reduces inflammation; however, the impact that ketones and other alternative metabolic fuels produced during energy deficits have on the innate immune response is unknown. We report that BHB, but neither AcAc nor the structurally related short-chain fatty acids butyrate and acetate, suppresses activation of the NLRP3 inflammasome in response to urate crystals, ATP and lipotoxic fatty acids. BHB did not inhibit caspase-1 activation in response to pathogens that activate the NLR family, CARD domain containing 4 (NLRC4) or absent in melanoma 2 (AIM2) inflammasome and did not affect non-canonical caspase-11, inflammasome activation. Mechanistically, BHB inhibits the NLRP3 inflammasome by preventing K(+) efflux and reducing ASC oligomerization and speck formation. The inhibitory effects of BHB on NLRP3 are not dependent on chirality or starvation-regulated mechanisms like AMP-activated protein kinase (AMPK), reactive oxygen species (ROS), autophagy or glycolytic inhibition. BHB blocks the NLRP3 inflammasome without undergoing oxidation in the TCA cycle, and independently of uncoupling protein-2 (UCP2), sirtuin-2 (SIRT2), the G protein-coupled receptor GPR109A or hydrocaboxylic acid receptor 2 (HCAR2). BHB reduces NLRP3 inflammasome-mediated interleukin (IL)-1β and IL-18 production in human monocytes. In vivo, BHB or a ketogenic diet attenuates caspase-1 activation and IL-1β secretion in mouse models of NLRP3-mediated diseases such as Muckle-Wells syndrome, familial cold autoinflammatory syndrome and urate crystal-induced peritonitis. Our findings suggest that the anti-inflammatory effects of caloric restriction or ketogenic diets may be linked to BHB-mediated inhibition of the NLRP3 inflammasome.

Iron Formation: The Sedimentary Product of a Complex Interplay among Mantle, Tectonic, Oceanic, and Biospheric Processes

Abstract: Iron formations are economically important sedimentary rocks that are most common in Precambrian sedimentary successions. Although many aspects of their origin remain unresolved, it is widely accepted that secular changes in the style of their deposition are linked to environmental and geochemical evolution of Earth. Two types of Precambrian iron formations have been recognized with respect to their depositional setting. Algoma-type iron formations are interlayered with or stratigraphically linked to submarine-emplaced volcanic rocks in greenstone belts and, in some cases, with volcanogenic massive sulfide (VMS) deposits. In contrast, larger Superior-type iron formations are developed in passive-margin sedimentary rock successions and generally lack direct relationships with volcanic rocks. The early distinction made between these two iron-formation types, although mimimized by later studies, remains a valid first approximation. Texturally, iron formations were also divided into two groups. Banded iron formation (BIF) is dominant in Archean to earliest Paleoproterozoic successions, whereas granular iron formation (GIF) is much more common in Paleoproterozoic successions. Secular changes in the style of iron-formation deposition, identified more than 20 years ago, have been linked to diverse environmental changes. Geochronologic studies emphasize the episodic nature of the deposition of giant iron formations, as they are coeval with, and genetically linked to, time periods when large igneous provinces (LIPs) were emplaced. Superior-type iron formation first appeared at ca. 2.6 Ga, when construction of large continents changed the heat flux at the core-mantle boundary. From ca. 2.6 to ca. 2.4 Ga, global mafic magmatism culminated in the deposition of giant Superior-type BIF in South Africa, Australia, Brazil, Russia, and Ukraine. The younger BIFs in this age range were deposited during the early stage of a shift from reducing to oxidizing conditions in the ocean-atmosphere system. Counterintuitively, enhanced magmatism at 2.50 to 2.45 Ga may have triggered atmospheric oxidation. After the rise of atmospheric oxygen during the GOE at ca. 2.4 Ga, GIF became abundant in the rock record, compared to the predominance of BIF prior to the Great Oxidation Event (GOE). Iron formations generally disappeared at ca. 1.85 Ga, reappearing at the end of the Neoproterozoic, again tied to periods of intense magmatic activity and also, in this case, to global glaciations, the so-called Snowball Earth events. By the Phanerozoic, marine iron deposition was restricted to local areas of closed to semiclosed basins, where volcanic and hydrothermal activity was extensive (e.g., back-arc basins), with ironstones additionally being linked to periods of intense magmatic activity and ocean anoxia. Late Paleoproterozoic iron formations and Paleozoic ironstones were deposited at the redoxcline where biological and nonbiological oxidation occurred. In contrast, older iron formations were deposited in anoxic oceans, where ferrous iron oxidation by anoxygenic photosynthetic bacteria was likely an important process. Endogenic and exogenic factors contributed to produce the conditions necessary for deposition of iron formation. Mantle plume events that led to the formation of LIPs also enhanced spreading rates of midocean ridges and produced higher growth rates of oceanic plateaus, both processes thus having contributed to a higher hydrothermal flux to the ocean. Oceanic and atmospheric redox states determined the fate of this flux. When the hydrothermal flux overwhelmed the oceanic oxidation state, iron was transported and deposited distally from hydrothermal vents. Where the hydrothermal flux was insufficient to overwhelm the oceanic redox state, iron was deposited only proximally, generally as oxides or sulfides. Manganese, in contrast, was more mobile. We conclude that occurrences of BIF, GIF, Phanerozoic ironstones, and exhalites surrounding VMS systems record a complex interplay involving mantle heat, tectonics, and surface redox conditions throughout Earth history, in which mantle heat unidirectionally declined and the surface oxidation state mainly unidirectionally increased, accompanied by superimposed shorter term fluctuations.

Low Mid-Proterozoic atmospheric oxygen levels and the delayed rise of animals

Abstract: The oxygenation of Earth’s surface fundamentally altered global biogeochemical cycles and ultimately paved the way for the rise of metazoans at the end of the Proterozoic. However, current estimates for atmospheric oxygen (O₂) levels during the billion years leading up to this time vary widely. On the basis of chromium (Cr) isotope data from a suite of Proterozoic sediments from China, Australia, and North America, interpreted in the context of data from similar depositional environments from Phanerozoic time, we find evidence for inhibited oxidation of Cr at Earth’s surface in the mid-Proterozoic (1.8 to 0.8 billion years ago). These data suggest that atmospheric O₂ levels were at most 0.1% of present atmospheric levels. Direct evidence for such low O₂ concentrations in the Proterozoic helps explain the late emergence and diversification of metazoans.

Inflammasomes: mechanism of action, role in disease, and therapeutics

Abstract: The inflammasomes are innate immune system receptors and sensors that regulate the activation of caspase-1 and induce inflammation in response to infectious microbes and molecules derived from host proteins. They have been implicated in a host of inflammatory disorders. Recent developments have greatly enhanced our understanding of the molecular mechanisms by which different inflammasomes are activated. Additionally, increasing evidence in mouse models, supported by human data, strongly implicates an involvement of the inflammasome in the initiation or progression of diseases with a high impact on public health, such as metabolic disorders and neurodegenerative diseases. Finally, recent developments pointing toward promising therapeutics that target inflammasome activity in inflammatory diseases have been reported. This review will focus on these three areas of inflammasome research.

The NLRP3 inflammasome: molecular activation and regulation to therapeutics

Abstract: NLRP3 (NOD-, LRR- and pyrin domain-containing protein 3) is an intracellular sensor that detects a broad range of microbial motifs, endogenous danger signals and environmental irritants, resulting in the formation and activation of the NLRP3 inflammasome. Assembly of the NLRP3 inflammasome leads to caspase 1-dependent release of the pro-inflammatory cytokines IL-1β and IL-18, as well as to gasdermin D-mediated pyroptotic cell death. Recent studies have revealed new regulators of the NLRP3 inflammasome, including new interacting or regulatory proteins, metabolic pathways and a regulatory mitochondrial hub. In this Review, we present the molecular, cell biological and biochemical bases of NLRP3 activation and regulation and describe how this mechanistic understanding is leading to potential therapeutics that target the NLRP3 inflammasome.

Inflammasomes: mechanism of assembly, regulation and signalling

Abstract: Inflammasomes are multiprotein signalling platforms that control the inflammatory response and coordinate antimicrobial host defences. They are assembled by pattern-recognition receptors following the detection of pathogenic microorganisms and danger signals in the cytosol of host cells, and they activate inflammatory caspases to produce cytokines and to induce pyroptotic cell death. The clinical importance of inflammasomes reaches beyond infectious disease, as dysregulated inflammasome activity is associated with numerous hereditary and acquired inflammatory disorders. In this Review, we discuss the recent developments in inflammasome research with a focus on the molecular mechanisms that govern inflammasome assembly, signalling and regulation.