Oliver L. Phillips

Bio: Oliver L. Phillips is an academic researcher from University of Leeds. The author has contributed to research in topics: Biodiversity & Amazon rainforest. The author has an hindex of 98, co-authored 336 publications receiving 50569 citations. Previous affiliations of Oliver L. Phillips include University of York & University of Brasília.

Individual tree crown delineation in a highly diverse tropical forest using very high resolution satellite images

Abstract: Mapping tropical tree species at landscape scales to provide information for ecologists and forest managers is a new challenge for the remote sensing community. For this purpose, detection and delineation of individual tree crowns (ITCs) is a prerequisite. Here, we present a new method of automatic tree crown delineation based only on very high resolution images from WorldView-2 satellite and apply it to a region of the Atlantic rain forest with highly heterogeneous tropical canopy cover – the Santa Genebra forest reserve in Brazil. The method works in successive steps that involve pre-processing, selection of forested pixels, enhancement of borders, detection of pixels in the crown borders, correction of shade in large trees and, finally, segmentation of the tree crowns. Principally, the method uses four techniques: rolling ball algorithm and mathematical morphological operations to enhance the crown borders and ease the extraction of tree crowns; bimodal distribution parameters estimations to identify the shaded pixels in the gaps, borders, and crowns; and focal statistics for the analysis of neighbouring pixels. Crown detection is validated by comparing the delineated ITCs with a sample of ITCs delineated manually by visual interpretation. In addition, to test if the spectra of individual species are conserved in the automatic delineated crowns, we compare the accuracy of species prediction with automatic and manual delineated crowns with known species. We find that our method permits detection of up to 80% of ITCs. The seven species with over 10 crowns identified in the field were mapped with reasonable accuracy (30.5–96%) given that only WorldView-2 bands and texture features were used. Similar classification accuracies were obtained using both automatic and manual delineation, thereby confirming that species’ spectral responses are preserved in the automatic method and thus permitting the recognition of species at the landscape scale. Our method might support tropical forest applications, such as mapping species and canopy characteristics at the landscape scale.

Long-term environmental change in tropical forests: increasing tree turnover

Abstract: Analyzing permanent plot data from 40 tropical forest sites, Phillips and Gentry (1994) found that there has been a significant tendency for tree turnover – as measured by tree mortality and recruitment – to increase since the 1950s. The dataset is now substantially improved, and includes 67 mature forest sites with turnover data representing most of the major tropical forest regions of the world. This paper presents an updated and expanded analysis of the latest data, and confirms that tree turnover has increased in mature tropical forest plots. Several artifactual explanations have been suggested but none are supported by the available data, suggesting that surviving mature tropical forests have been recently affected by large-scale anthropogenic or natural change. The effects of increased turnover may include impacts on future global atmosphere, climate, and biodiversity. Better understanding of the ecological changes in mature tropical forests depends on progress in two critical research areas – a ground-based monitoring network of long-term, fully identified tropical forest plots, and controlled manipulation of atmospheric conditions in forest experiments. Research activity in both areas needs to be substantially increased if we are to understand and predict the complex interactions between tropical forest ecology and global environmental change.

Impacts of selective logging on tree diversity across a rainforest landscape: the importance of spatial scale

Abstract: Selective logging of tropical forests imposes spatial pattern on the landscape by creating a mosaic of patches affected by different intensities of disturbance. To understand the ecological impacts of selective logging it is therefore necessary to explore how patterns of tree species composition are affected by this patchy disturbance. This study examines the impacts of selective logging on species composition and spatial patterns of vegetation structure and tree diversity in Sabah, Borneo. We compare tree diversity between logged and unlogged forest at three scales: species richness within plots, species turnover among plots, and total species richness and composition of plots combined. Logging had no effect on tree diversity measured at the smallest scale. Logged forest had a greater rate of species turnover with distance, so at a large spatial scale it supported more tree species than the relatively homogeneous unlogged area. Tree species composition also differed significantly between the two types of forest, with more small dipterocarps and large pioneers in logged forest, and more large dipterocarps in unlogged forest. Our results emphasize the importance of sampling at a sufficiently large scale to represent patterns of biodiversity within tropical forest landscapes. Large areas of production forest in SE Asia are threatened with conversion to commercial crops; our findings show that selectively logged forest can retain considerable conservation value.

Leaf‐level photosynthetic capacity in lowland Amazonian and high‐elevation Andean tropical moist forests of Peru

Abstract: We examined whether variations in photosynthetic capacity are linked to variations in the environment and/or associated leaf traits for tropical moist forests (TMFs) in the Andes/western Amazon regions of Peru. We compared photosynthetic capacity (maximal rate of carboxylation of Rubisco (Vcmax ), and the maximum rate of electron transport (Jmax )), leaf mass, nitrogen (N) and phosphorus (P) per unit leaf area (Ma , Na and Pa , respectively), and chlorophyll from 210 species at 18 field sites along a 3300-m elevation gradient. Western blots were used to quantify the abundance of the CO2 -fixing enzyme Rubisco. Area- and N-based rates of photosynthetic capacity at 25°C were higher in upland than lowland TMFs, underpinned by greater investment of N in photosynthesis in high-elevation trees. Soil [P] and leaf Pa were key explanatory factors for models of area-based Vcmax and Jmax but did not account for variations in photosynthetic N-use efficiency. At any given Na and Pa , the fraction of N allocated to photosynthesis was higher in upland than lowland species. For a small subset of lowland TMF trees examined, a substantial fraction of Rubisco was inactive. These results highlight the importance of soil- and leaf-P in defining the photosynthetic capacity of TMFs, with variations in N allocation and Rubisco activation state further influencing photosynthetic rates and N-use efficiency of these critically important forests.

疟原虫var基因转换速率变化导致抗原变异[英]／Paul H, Robert P, Christodoulou Z, et al//Proc Natl Acad Sci U S A

Abstract: 抗原变异可使得多种致病微生物易于逃避宿主免疫应答。表达在感染红细胞表面的恶性疟原虫红细胞表面蛋白1（PfPMP1）与感染红细胞、内皮细胞、树突状细胞以及胎盘的单个或多个受体作用，在黏附及免疫逃避中起关键的作用。每个单倍体基因组var基因家族编码约60种成员，通过启动转录不同的var基因变异体为抗原变异提供了分子基础。

The Theory of Island Biogeography

Abstract: Preface to the Princeton Landmarks in Biology Edition vii Preface xi Symbols Used xiii 1. The Importance of Islands 3 2. Area and Number of Speicies 8 3. Further Explanations of the Area-Diversity Pattern 19 4. The Strategy of Colonization 68 5. Invasibility and the Variable Niche 94 6. Stepping Stones and Biotic Exchange 123 7. Evolutionary Changes Following Colonization 145 8. Prospect 181 Glossary 185 References 193 Index 201

Novel methods improve prediction of species' distributions from occurrence data

Abstract: Prediction of species' distributions is central to diverse applications in ecology, evolution and conservation science. There is increasing electronic access to vast sets of occurrence records in museums and herbaria, yet little effective guidance on how best to use this information in the context of numerous approaches for modelling distributions. To meet this need, we compared 16 modelling methods over 226 species from 6 regions of the world, creating the most comprehensive set of model comparisons to date. We used presence-only data to fit models, and independent presence-absence data to evaluate the predictions. Along with well-established modelling methods such as generalised additive models and GARP and BIOCLIM, we explored methods that either have been developed recently or have rarely been applied to modelling species' distributions. These include machine-learning methods and community models, both of which have features that may make them particularly well suited to noisy or sparse information, as is typical of species' occurrence data. Presence-only data were effective for modelling species' distributions for many species and regions. The novel methods consistently outperformed more established methods. The results of our analysis are promising for the use of data from museums and herbaria, especially as methods suited to the noise inherent in such data improve.

Planetary boundaries: Guiding human development on a changing planet

Abstract: The planetary boundaries framework defines a safe operating space for humanity based on the intrinsic biophysical processes that regulate the stability of the Earth system. Here, we revise and update the planetary boundary framework, with a focus on the underpinning biophysical science, based on targeted input from expert research communities and on more general scientific advances over the past 5 years. Several of the boundaries now have a two-tier approach, reflecting the importance of cross-scale interactions and the regional-level heterogeneity of the processes that underpin the boundaries. Two core boundaries—climate change and biosphere integrity—have been identified, each of which has the potential on its own to drive the Earth system into a new state should they be substantially and persistently transgressed.