P
Paul Macklin
Researcher at Indiana University
Publications - 71
Citations - 4513
Paul Macklin is an academic researcher from Indiana University. The author has contributed to research in topics: Systems biology & Cancer. The author has an hindex of 25, co-authored 66 publications receiving 3545 citations. Previous affiliations of Paul Macklin include University of Texas Health Science Center at Houston & University of California, Irvine.
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Journal ArticleDOI
Nonlinear modelling of cancer: Bridging the gap between cells and tumours
John Lowengrub,Hermann B. Frieboes,Hermann B. Frieboes,Fang Jin,Fang Jin,Yao-Li Chuang,Xiangrong Li,Paul Macklin,Steven M. Wise,Vittorio Cristini +9 more
TL;DR: In this paper, the authors provide an overview of multiscale modelling focusing on the growth phase of tumours and bypassing the initial stage of tumourigenesis, and limit the scope further by considering models of tumor progression that do not distinguish tumour cells by their age and do not consider immune system interactions nor do they describe models of therapy.
Journal ArticleDOI
Multiscale Cancer Modeling
TL;DR: In this review, the most recent and important multiscale cancer modeling works that have successfully established a mechanistic link between different biological scales are introduced and biophysical, biochemical, and biomechanical factors are considered in these models.
Journal ArticleDOI
Multiscale modelling and nonlinear simulation of vascular tumour growth.
Paul Macklin,Steven Robert McDougall,Alexander R. A. Anderson,Mark A. J. Chaplain,Vittorio Cristini,Vittorio Cristini,John Lowengrub +6 more
TL;DR: A new multiscale mathematical model for solid tumour growth is presented which couples an improved model of tumour invasion with a model of malignant tumour-induced angiogenesis and demonstrates the importance of the coupling between the development and remodeling of the vascular network, the blood flow through the network and the tumour progression.
Journal ArticleDOI
PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems.
Ahmadreza Ghaffarizadeh,Randy Heiland,Samuel H. Friedman,Shannon M. Mumenthaler,Paul Macklin,Paul Macklin +5 more
TL;DR: PhysiCell is demonstrated by simulating the impact of necrotic core biomechanics, 3-D geometry, and stochasticity on the dynamics of hanging drop tumor spheroids and ductal carcinoma in situ (DCIS) of the breast.
Journal ArticleDOI
The human body at cellular resolution: the NIH Human Biomolecular Atlas Program
Michael Snyder,Shin Lin,Amanda Posgai,Mark A. Atkinson,Aviv Regev,Jennifer Rood,Orit Rozenblatt-Rosen,Leslie Gaffney,Anna Hupalowska,Rahul Satija,Nils Gehlenborg,Jay Shendure,Julia Laskin,Pehr B. Harbury,Nicholas A. Nystrom,Jonathan C. Silverstein,Ziv Bar-Joseph,Kun Zhang,Katy Börner,Yiing Lin,Richard Conroy,Dena Procaccini,Ananda L. Roy,Ajay Pillai,Marishka Brown,Zorina S. Galis,Caltech-UW Tmc,Long Cai,Cole Trapnell,Dana Jackson,Stanford-WashU Tmc,Garry P. Nolan,William J. Greenleaf,Sylvia K. Plevritis,Sara Ahadi,Stephanie A. Nevins,Hayan Lee,Christian Martijn Schuerch,Sarah Black,Vishal G. Venkataraaman,Ed Esplin,Aaron M. Horning,Amir Bahmani,Ucsd Tmc,Xin bSun,Sanjay Jain,James S. Hagood,Gloria S. Pryhuber,Peter V. Kharchenko,Bernd bBodenmiller,Todd M. Brusko,Michael J. Clare-Salzler,Harry S. Nick,Kevin J. Otto,Clive hWasserfall,Marda Jorgensen,Maigan A. Brusko,Sergio Maffioletti,Richard M. Caprioli,Jeffrey M. Spraggins,Danielle cGutierrez,Nathan Heath Patterson,Elizabeth K. Neumann,Raymond C. Harris,Mark P. deCaestecker,Agnes B. Fogo,Raf Van de Plas,Ken S. Lau,Guo-Cheng Yuan,Qian Zhu,Ruben Dries,Harvard Ttd,Peng Yin,Sinem K. Saka,Jocelyn Y. Kishi,Yu Wang,Isabel Goldaracena,Purdue Ttd,DongHye Ye,Kristin E. Burnum-Johnson,Paul D. Piehowski,Charles Ansong,Ying Zhu,Stanford Ttd,Tushar bDesai,Jay Mulye,Peter Chou,Monica Nagendran,Visualization HuBMAP Integration,Sarah A. Teichmann,Benedict aten,Robert F. dMurphy,Jian Ma,Vladimir Yu. Kiselev,Carl Kingsford,Allyson Ricarte,Maria Keays,Sushma A. Akoju,Matthew Ruffalo,Margaret Vella,Chuck McCallum,Leonard E. Cross,Samuel H. Friedman,Randy Heiland,Bruce Herr,Paul Macklin,Ellen M. Quardokus,Lisel Record,James P. Sluka,Griffin M. Weber,Engagement Component,Philip D. Blood,Alexander J. Ropelewski,William E. Shirey,Robin M. Scibek,Paula M. Mabee,W. Christopher Lenhardt,Kimberly Robasky,Stavros Michailidis,John C. Marioni,Andrew Butler,Tim Stuart,Eyal Fisher,Shila Ghazanfar,Gökcen Eraslan,Tommaso Biancalani,Eeshit Dhaval Vaishnav,Ananda L. Roy,Zorina S. Galis,Pothur Srinivas,Aaron Pawlyk,Salvatore Sechi,Elizabeth L. Wilder,James E. Anderson +133 more
TL;DR: The NIH Common Fund Human Biomolecular Atlas Program (HuBMAP) intends to develop a widely accessible framework for comprehensively mapping the human body at single-cell resolution by supporting technology development, data acquisition, and detailed spatial mapping.