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Pavel Kurnosov
Researcher at Harvard University
Publications - 5
Citations - 877
Pavel Kurnosov is an academic researcher from Harvard University. The author has contributed to research in topics: Gene & Functional genomics. The author has an hindex of 4, co-authored 5 publications receiving 850 citations. Previous affiliations of Pavel Kurnosov include Wellcome Trust Sanger Institute & University of Cambridge.
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ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression
Helen Parkinson,Misha Kapushesky,Nikolay Kolesnikov,Gabriella Rustici,Mohammadreza Shojatalab,Niran Abeygunawardena,Hugo Bérubé,Miroslaw Dylag,Ibrahim Emam,Anna Farne,Ele Holloway,Margus Lukk,James Malone,Roby Mani,Ekaterina Pilicheva,Tim F. Rayner,Faisal I. Rezwan,Anjan Sharma,Eleanor Williams,Xiangqun Zheng Bradley,Tomasz Adamusiak,Marco Brandizi,Tony Burdett,Richard M.R. Coulson,Maria Krestyaninova,Pavel Kurnosov,Eamonn Maguire,Sudeshna Guha Neogi,Philippe Rocca-Serra,Susanna-Assunta Sansone,Nataliya Sklyar,Mengyao Zhao,Ugis Sarkans,Alvis Brazma +33 more
TL;DR: This update describes the ArrayExpress developments over the last two years and describes the new summary database and meta-analytical tool of ranked gene expression across multiple experiments and different biological conditions.
Journal ArticleDOI
Gene Expression Atlas at the European Bioinformatics Institute
Misha Kapushesky,Ibrahim Emam,Ele Holloway,Pavel Kurnosov,Andrey Zorin,James Malone,Gabriella Rustici,Eleanor Williams,Helen Parkinson,Alvis Brazma +9 more
TL;DR: The Gene Expression Atlas (http://www.ebi.ac.uk/gxa) is an added-value database providing information about gene expression in different cell types, organism parts, developmental stages, disease states, sample treatments and other biological/experimental conditions.
Journal ArticleDOI
Gene Expression Atlas update—a value-added database of microarray and sequencing-based functional genomics experiments
Misha Kapushesky,Tomasz Adamusiak,Tony Burdett,Aedín C. Culhane,Anna Farne,Alexey Filippov,Ele Holloway,Andrey Klebanov,Nataliya Kryvych,Natalja Kurbatova,Pavel Kurnosov,James Malone,Olga Melnichuk,Robert Petryszak,Nikolay Pultsin,Gabriella Rustici,Andrew Tikhonov,Ravensara S. Travillian,Eleanor Williams,Andrey Zorin,Helen Parkinson,Alvis Brazma +21 more
TL;DR: The Gene Expression Atlas is an added-value database providing information about gene expression in different cell types, organism parts, developmental stages, disease states, sample treatments and other biological/experimental conditions.
Journal ArticleDOI
ontoCAT: an R package for ontology traversal and search.
TL;DR: The ontoCAT-an R package to access ontologies in widely used standard formats, stored locally in the filesystem or available online, and supports a number of traversal and search functions on a single ontology.
ontoCAT: package for basic operations with ontologies
TL;DR: In ontoCAT the subsumption “subclass/superclass” is supported in a user friendly form of “child – parent” relationship as no distinction is made between universals and particulars as they are both treated as ontology terms.