Showing papers by "Rajesh Kumar published in 2018"

GW170817: Measurements of Neutron Star Radii and Equation of State.

Abstract: On 17 August 2017, the LIGO and Virgo observatories made the first direct detection of gravitational waves from the coalescence of a neutron star binary system. The detection of this gravitational-wave signal, GW170817, offers a novel opportunity to directly probe the properties of matter at the extreme conditions found in the interior of these stars. The initial, minimal-assumption analysis of the LIGO and Virgo data placed constraints on the tidal effects of the coalescing bodies, which were then translated to constraints on neutron star radii. Here, we expand upon previous analyses by working under the hypothesis that both bodies were neutron stars that are described by the same equation of state and have spins within the range observed in Galactic binary neutron stars. Our analysis employs two methods: the use of equation-of-state-insensitive relations between various macroscopic properties of the neutron stars and the use of an efficient parametrization of the defining function pðρÞ of the equation of state itself. From the LIGO and Virgo data alone and the first method, we measure the two neutron star radii as R1 ¼ 10.8 þ2.0 −1.7 km for the heavier star and R2 ¼ 10.7 þ2.1 −1.5 km for the lighter star at the 90% credible level. If we additionally require that the equation of state supports neutron stars with masses larger than 1.97 M⊙ as required from electromagnetic observations and employ the equation-of-state parametrization, we further constrain R1 ¼ 11.9 þ1.4 −1.4 km and R2 ¼ 11.9 þ1.4 −1.4 km at the 90% credible level. Finally, we obtain constraints on pðρÞ at supranuclear densities, with pressure at twice nuclear saturation density measured at 3.5 þ2.7 −1.7 × 1034 dyn cm−2 at the 90% level.

Prospects for Observing and Localizing Gravitational-Wave Transients with Advanced LIGO, Advanced Virgo and KAGRA

Abstract: We present possible observing scenarios for the Advanced LIGO, Advanced Virgo and KAGRA gravitational-wave detectors over the next decade, with the intention of providing information to the astronomy community to facilitate planning for multi-messenger astronomy with gravitational waves. We estimate the sensitivity of the network to transient gravitational-wave signals, and study the capability of the network to determine the sky location of the source. We report our findings for gravitational-wave transients, with particular focus on gravitational-wave signals from the inspiral of binary neutron star systems, which are the most promising targets for multi-messenger astronomy. The ability to localize the sources of the detected signals depends on the geographical distribution of the detectors and their relative sensitivity, and 90% credible regions can be as large as thousands of square degrees when only two sensitive detectors are operational. Determining the sky position of a significant fraction of detected signals to areas of 5– 20 deg2 requires at least three detectors of sensitivity within a factor of ∼2 of each other and with a broad frequency bandwidth. When all detectors, including KAGRA and the third LIGO detector in India, reach design sensitivity, a significant fraction of gravitational-wave signals will be localized to a few square degrees by gravitational-wave observations alone.

Binary Black Hole Population Properties Inferred from the First and Second Observing Runs of Advanced LIGO and Advanced Virgo

Abstract: We present results on the mass, spin, and redshift distributions with phenomenological population models using the ten binary black hole mergers detected in the first and second observing runs completed by Advanced LIGO and Advanced Virgo. We constrain properties of the binary black hole (BBH) mass spectrum using models with a range of parameterizations of the BBH mass and spin distributions. We find that the mass distribution of the more massive black hole in such binaries is well approximated by models with no more than 1% of black holes more massive than $45\,M_\odot$, and a power law index of $\alpha = {1.3}^{+1.4}_{-1.7}$ (90% credibility). We also show that BBHs are unlikely to be composed of black holes with large spins aligned to the orbital angular momentum. Modelling the evolution of the BBH merger rate with redshift, we show that it is at or increasing with redshift with 93% probability. Marginalizing over uncertainties in the BBH population, we find robust estimates of the BBH merger rate density of $R = {53.2}^{+55.8}_{-28.2}$ Gpc$^{-3}$ yr$^{-1}$ (90% credibility). As the BBH catalog grows in future observing runs, we expect that uncertainties in the population model parameters will shrink, potentially providing insights into the formation of black holes via supernovae, binary interactions of massive stars, stellar cluster dynamics, and the formation history of black holes across cosmic time.

Properties of the binary neutron star merger GW170817

Abstract: On August 17, 2017, the Advanced LIGO and Advanced Virgo gravitational-wave detectors observed a low-mass compact binary inspiral. The initial sky localization of the source of the gravitational-wave signal, GW170817, allowed electromagnetic observatories to identify NGC 4993 as the host galaxy. In this work, we improve initial estimates of the binary's properties, including component masses, spins, and tidal parameters, using the known source location, improved modeling, and recalibrated Virgo data. We extend the range of gravitational-wave frequencies considered down to 23 Hz, compared to 30 Hz in the initial analysis. We also compare results inferred using several signal models, which are more accurate and incorporate additional physical effects as compared to the initial analysis. We improve the localization of the gravitational-wave source to a 90% credible region of $16~\mathrm{deg}^2$. We find tighter constraints on the masses, spins, and tidal parameters, and continue to find no evidence for nonzero component spins. The component masses are inferred to lie between 1.00 and 1.89 $M_\odot$ when allowing for large component spins, and to lie between 1.16 and 1.60 $M_\odot$ (with a total mass $2.73^{+0.04}_{-0.01} \, M_\odot$) when the spins are restricted to be within the range observed in Galactic binary neutron stars. Under minimal assumptions about the nature of the compact objects, our constraints for the tidal deformability parameter $\tilde \Lambda$ are $(0,630)$ when we allow for large component spins, and $300^{+420}_{-230}$ (using a 90% highest posterior density interval) when restricting the magnitude of the component spins, ruling out several equation-of-state models at the 90% credible level. Finally, with LIGO and GEO600 data, we use a Bayesian analysis to place upper limits on the amplitude and spectral energy density of a possible post-merger signal. (Abridged)

GWTC-1: A Gravitational-Wave Transient Catalog of Compact Binary Mergers Observed by LIGO and Virgo during the First and Second Observing Runs

Abstract: We present the results from three gravitational-wave searches for coalescing compact binaries with component masses above 1$\mathrm{M}_\odot$ during the first and second observing runs of the Advanced gravitational-wave detector network. During the first observing run (O1), from September $12^\mathrm{th}$, 2015 to January $19^\mathrm{th}$, 2016, gravitational waves from three binary black hole mergers were detected. The second observing run (O2), which ran from November $30^\mathrm{th}$, 2016 to August $25^\mathrm{th}$, 2017, saw the first detection of gravitational waves from a binary neutron star inspiral, in addition to the observation of gravitational waves from a total of seven binary black hole mergers, four of which we report here for the first time: GW170729, GW170809, GW170818 and GW170823. For all significant gravitational-wave events, we provide estimates of the source properties. The detected binary black holes have total masses between $18.6_{-0.7}^{+3.2}\mathrm{M}_\odot$, and $84.4_{-11.1}^{+15.8} \mathrm{M}_\odot$, and range in distance between $320_{-110}^{+120}$ Mpc and $2840_{-1360}^{+1400}$ Mpc. No neutron star - black hole mergers were detected. In addition to highly significant gravitational-wave events, we also provide a list of marginal event candidates with an estimated false alarm rate less than 1 per 30 days. From these results over the first two observing runs, which include approximately one gravitational-wave detection per 15 days of data searched, we infer merger rates at the 90% confidence intervals of $110\, -\, 3840$ $\mathrm{Gpc}^{-3}\,\mathrm{y}^{-1}$ for binary neutron stars and $9.7\, -\, 101$ $\mathrm{Gpc}^{-3}\,\mathrm{y}^{-1}$ for binary black holes assuming fixed population distributions, and determine a neutron star - black hole merger rate 90% upper limit of $610$ $\mathrm{Gpc}^{-3}\,\mathrm{y}^{-1}$.

Prospects for observing and localizing gravitational-wave transients with Advanced LIGO, Advanced Virgo and KAGRA

Abstract: We present possible observing scenarios for the Advanced LIGO, Advanced Virgo and KAGRA gravitational-wave detectors over the next decade, with the intention of providing information to the astronomy community to facilitate planning for multi-messenger astronomy with gravitational waves. We estimate the sensitivity of the network to transient gravitational-wave signals, and study the capability of the network to determine the sky location of the source. We report our findings for gravitational-wave transients, with particular focus on gravitational-wave signals from the inspiral of binary neutron star systems, which are the most promising targets for multi-messenger astronomy. The ability to localize the sources of the detected signals depends on the geographical distribution of the detectors and their relative sensitivity, and $$90\\%$$90% credible regions can be as large as thousands of square degrees when only two sensitive detectors are operational. Determining the sky position of a significant fraction of detected signals to areas of 5–$$20~\\mathrm {deg}^2$$20deg2 requires at least three detectors of sensitivity within a factor of $$\\sim 2$$∼2 of each other and with a broad frequency bandwidth. When all detectors, including KAGRA and the third LIGO detector in India, reach design sensitivity, a significant fraction of gravitational-wave signals will be localized to a few square degrees by gravitational-wave observations alone.

KAGRA: 2.5 Generation Interferometric Gravitational Wave Detector

Abstract: The recent detections of gravitational waves (GWs) reported by LIGO/Virgo collaborations have made significant impact on physics and astronomy. A global network of GW detectors will play a key role to solve the unknown nature of the sources in coordinated observations with astronomical telescopes and detectors. Here we introduce KAGRA (former name LCGT; Large-scale Cryogenic Gravitational wave Telescope), a new GW detector with two 3-km baseline arms arranged in the shape of an "L", located inside the Mt. Ikenoyama, Kamioka, Gifu, Japan. KAGRA's design is similar to those of the second generations such as Advanced LIGO/Virgo, but it will be operating at the cryogenic temperature with sapphire mirrors. This low temperature feature is advantageous for improving the sensitivity around 100 Hz and is considered as an important feature for the third generation GW detector concept (e.g. Einstein Telescope of Europe or Cosmic Explorer of USA). Hence, KAGRA is often called as a 2.5 generation GW detector based on laser interferometry. The installation and commissioning of KAGRA is underway and its cryogenic systems have been successfully tested in May, 2018. KAGRA's first observation run is scheduled in late 2019, aiming to join the third observation run (O3) of the advanced LIGO/Virgo network. In this work, we describe a brief history of KAGRA and highlights of main feature. We also discuss the prospects of GW observation with KAGRA in the era of O3. When operating along with the existing GW detectors, KAGRA will be helpful to locate a GW source more accurately and to determine the source parameters with higher precision, providing information for follow-up observations of a GW trigger candidate.

GW170817: Implications for the Stochastic Gravitational-Wave Background from Compact Binary Coalescences

Abstract: The LIGO Scientific and Virgo Collaborations have announced the event GW170817, the first detection of gravitational waves from the coalescence of two neutron stars. The merger rate of binary neutron stars estimated from this event suggests that distant, unresolvable binary neutron stars create a significant astrophysical stochastic gravitational-wave background. The binary neutron star component will add to the contribution from binary black holes, increasing the amplitude of the total astrophysical background relative to previous expectations. In the Advanced LIGO-Virgo frequency band most sensitive to stochastic backgrounds (near 25 Hz), we predict a total astrophysical background with amplitude ΩGW(f=25 Hz)=1.8 +2.7 −1.3×10−9 with 90% confidence, compared with ΩGW(f=25 Hz)=1.1 +1.2 −0.7×10−9 from binary black holes alone. Assuming the most probable rate for compact binary mergers, we find that the total background may be detectable with a signal-to-noise-ratio of 3 after 40 months of total observation time, based on the expected timeline for Advanced LIGO and Virgo to reach their design sensitivity.

Pt nanoparticles decorated SnO2 nanoneedles for efficient CO gas sensing applications

Abstract: Herein, we report the synthesis, characterization, and gas sensing applications of Pt nanoparticles-decorated SnO 2 nanoneedles synthesized through a facile hydrothermal process. The synthesized nanoneedles were characterized for their morphological, structural, compositional and sensing properties using different characterization techniques. The morphological and structural characterizations confirmed the synthesis of well crystalline Pt nanoparticles decorated SnO 2 nanoneedles with tetragonal rutile crystal phase. X-ray photoelectron spectroscopic analysis (XPS) confirmed the spatial distribution of Pt metal into SnO 2 nanoneedles. Further, gas sensor applications of the synthesized nanoneedles were studies at different operating temperatures and concentrations of the CO gas. The detailed CO gas sensing analysis revealed that at an optimized temperature of 250 °C, the sensor exhibited 23.18 gas response with the response and recovery times of 15 s and 14 s, respectively. The long-term stability and the selectivity of the 3.125 at% Pt-decorated SnO 2 nanoneedles were also explored. Finally, a plausible gas sensing mechanism was also proposed.

Photoactivated Mixed In-Plane and Edge-Enriched p-Type MoS2 Flake-Based NO2 Sensor Working at Room Temperature.

Abstract: Toxic gases are produced during the burning of fossil fuels. Room temperature (RT) fast detection of toxic gases is still challenging. Recently, MoS2 transition metal dichalcogenides have sparked great attention in the research community due to their performance in gas sensing applications. However, MoS2 based gas sensors still suffer from long response and recovery times, especially at RT. Considering this challenge, here, we report photoactivated highly reversible and fast detection of NO2 sensors at room temperature (RT) by using mixed in-plane and edge-enriched p-MoS2 flakes (mixed MoS2). The sensor showed fast response with good sensitivity of ∼10.36% for 10 ppm of NO2 at RT without complete recovery. However, complete recovery was obtained with better sensor performance under UV light illumination at RT. The UV assisted NO2 sensing showed improved performance in terms of fast response and recovery kinetics with enhanced sensitivity to 10 ppm NO2 concentration. The sensor performance is also investig...

Constraints on cosmic strings using data from the first Advanced LIGO observing run

Abstract: Cosmic strings are topological defects which can be formed in grand unified theory scale phase transitions in the early universe. They are also predicted to form in the context of string theory. The main mechanism for a network of Nambu-Goto cosmic strings to lose energy is through the production of loops and the subsequent emission of gravitational waves, thus offering an experimental signature for the existence of cosmic strings. Here we report on the analysis conducted to specifically search for gravitational-wave bursts from cosmic string loops in the data of Advanced LIGO 2015-2016 observing run (O1). No evidence of such signals was found in the data, and as a result we set upper limits on the cosmic string parameters for three recent loop distribution models. In this paper, we initially derive constraints on the string tension Gμ and the intercommutation probability, using not only the burst analysis performed on the O1 data set but also results from the previously published LIGO stochastic O1 analysis, pulsar timing arrays, cosmic microwave background and big-bang nucleosynthesis experiments. We show that these data sets are complementary in that they probe gravitational waves produced by cosmic string loops during very different epochs. Finally, we show that the data sets exclude large parts of the parameter space of the three loop distribution models we consider.

Effects of data quality vetoes on a search for compact binary coalescences in Advanced LIGO's first observing run

Abstract: The first observing run of Advanced LIGO spanned 4 months, from 12 September 2015 to 19 January 2016, during which gravitational waves were directly detected from two binary black hole systems, namely GW150914 and GW151226. Confident detection of gravitational waves requires an understanding of instrumental transients and artifacts that can reduce the sensitivity of a search. Studies of the quality of the detector data yield insights into the cause of instrumental artifacts and data quality vetoes specific to a search are produced to mitigate the effects of problematic data. In this paper, the systematic removal of noisy data from analysis time is shown to improve the sensitivity of searches for compact binary coalescences. The output of the PyCBC pipeline, which is a python-based code package used to search for gravitational wave signals from compact binary coalescences, is used as a metric for improvement. GW150914 was a loud enough signal that removing noisy data did not improve its significance. However, the removal of data with excess noise decreased the false alarm rate of GW151226 by more than two orders of magnitude, from 1 in 770 yr to less than 1 in 186 000 yr.

Search for Tensor, Vector, and Scalar Polarizations in the Stochastic Gravitational-Wave Background

Abstract: The detection of gravitational waves with Advanced LIGO and Advanced Virgo has enabled novel tests of general relativity, including direct study of the polarization of gravitational waves. While general relativity allows for only two tensor gravitational-wave polarizations, general metric theories can additionally predict two vector and two scalar polarizations. The polarization of gravitational waves is encoded in the spectral shape of the stochastic gravitational-wave background, formed by the superposition of cosmological and individually unresolved astrophysical sources. Using data recorded by Advanced LIGO during its first observing run, we search for a stochastic background of generically polarized gravitational waves. We find no evidence for a background of any polarization, and place the first direct bounds on the contributions of vector and scalar polarizations to the stochastic background. Under log-uniform priors for the energy in each polarization, we limit the energy densities of tensor, vector, and scalar modes at 95% credibility to Ω_{0}^{T}<5.58×10^{-8}, Ω_{0}^{V}<6.35×10^{-8}, and Ω_{0}^{S}<1.08×10^{-7} at a reference frequency f_{0}=25 Hz.

Search for Subsolar-Mass Ultracompact Binaries in Advanced LIGO’s First Observing Run

Abstract: We present a search for subsolar mass ultracompact objects in data obtained during Advanced LIGO’s second observing run. In contrast to a previous search of Advanced LIGO data from the first observing run, this search includes the effects of component spin on the gravitational waveform. We identify no viable gravitational-wave candidates consistent with subsolar mass ultracompact binaries with at least one component between 0.2 M⊙–1.0 M⊙. We use the null result to constrain the binary merger rate of (0.2 M⊙, 0.2 M⊙) binaries to be less than 3.7×105 Gpc-3 yr-1 and the binary merger rate of (1.0 M⊙, 1.0 M⊙) binaries to be less than 5.2×103 Gpc-3 yr-1. Subsolar mass ultracompact objects are not expected to form via known stellar evolution channels, though it has been suggested that primordial density fluctuations or particle dark matter with cooling mechanisms and/or nuclear interactions could form black holes with subsolar masses. Assuming a particular primordial black hole (PBH) formation model, we constrain a population of merging 0.2 M⊙ black holes to account for less than 16% of the dark matter density and a population of merging 1.0 M⊙ black holes to account for less than 2% of the dark matter density. We discuss how constraints on the merger rate and dark matter fraction may be extended to arbitrary black hole population models that predict subsolar mass binaries.

Regulation of Arabidopsis brassinosteroid receptor BRI1 endocytosis and degradation by plant U-box PUB12/PUB13-mediated ubiquitination

Abstract: Plants largely rely on plasma membrane (PM)-resident receptor-like kinases (RLKs) to sense extracellular and intracellular stimuli and coordinate cell differentiation, growth, and immunity. Several RLKs have been shown to undergo internalization through the endocytic pathway with a poorly understood mechanism. Here, we show that endocytosis and protein abundance of the Arabidopsis brassinosteroid (BR) receptor, BR INSENSITIVE1 (BRI1), are regulated by plant U-box (PUB) E3 ubiquitin ligase PUB12- and PUB13-mediated ubiquitination. BR perception promotes BRI1 ubiquitination and association with PUB12 and PUB13 through phosphorylation at serine 344 residue. Loss of PUB12 and PUB13 results in reduced BRI1 ubiquitination and internalization accompanied with a prolonged BRI1 PM-residence time, indicating that ubiquitination of BRI1 by PUB12 and PUB13 is a key step in BRI1 endocytosis. Our studies provide a molecular link between BRI1 ubiquitination and internalization and reveal a unique mechanism of E3 ligase-substrate association regulated by phosphorylation.

Recurrent hotspot mutations in HRAS Q61 and PI3K-AKT pathway genes as drivers of breast adenomyoepitheliomas

Abstract: Adenomyoepithelioma of the breast is a rare tumor characterized by epithelial-myoepithelial differentiation, of which a subset will progress to invasive or metastatic cancer. We sought to define the genomic landscape of adenomyoepitheliomas. Massively parallel sequencing revealed highly recurrent somatic mutations in HRAS and PI3K-AKT pathway-related genes. Strikingly, HRAS mutations were restricted to estrogen receptor (ER)-negative tumors, all affected codon 61, and all but one co-occurred with PIK3CA or PIK3R1 mutations. To interrogate the functional significance of HRAS Q61 mutations in adenomyoepithelial differentiation, we expressed HRASQ61R alone or in combination with PIK3CAH1047R in non-transformed ER-negative breast epithelial cells. HRASQ61R induced characteristic phenotypes of adenomyoepitheliomas such as the expression of myoepithelial markers and loss of e-cadherin, hyperactivation of AKT signaling, and transformative properties that were arrested by combination therapy with AKT and MEK inhibitors. Our results indicate that breast adenomyoepitheliomas often manifest a unique transformation program featuring HRAS activation.

Search for gravitational waves from a long-lived remnant of the binary neutron star merger GW170817

Abstract: One unanswered question about the binary neutron star coalescence GW170817 is the nature of its post-merger remnant. A previous search for post-merger gravitational waves targeted high-frequency signals from a possible neutron star remnant with a maximum signal duration of 500 s. Here we revisit the neutron star remnant scenario with a focus on longer signal durations up until the end of the Second Advanced LIGO-Virgo Observing run, 8.5 days after the coalescence of GW170817. The main physical scenario for such emission is the power-law spindown of a massive magnetar-like remnant. We use four independent search algorithms with varying degrees of restrictiveness on the signal waveformand different ways of dealing with noise artefacts. In agreement with theoretical estimates, we find no significant signal candidates. Through simulated signals, we quantify that with the current detector sensitivity, nowhere in the studied parameter space are we sensitive to a signal from more than 1 Mpc away, compared to the actual distance of 40 Mpc. This study however serves as a prototype for post-merger analyses in future observing runs with expected higher sensitivity.

Construction of KAGRA: an Underground Gravitational Wave Observatory

Abstract: The major construction and initial-phase operation of a second-generation gravitational-wave detector, KAGRA, has been completed. The entire 3 km detector is installed underground in a mine in order to be isolated from background seismic vibrations on the surface. This allows us to achieve a good sensitivity at low frequencies and high stability of the detector. Bare-bones equipment for the interferometer operation has been installed and the first test run was accomplished in March and April of 2016 with a rather simple configuration. The initial configuration of KAGRA is called iKAGRA. In this paper, we summarize the construction of KAGRA, including a study of the advantages and challenges of building an underground detector, and the operation of the iKAGRA interferometer together with the geophysics interferometer that has been constructed in the same tunnel.

NEDD9 targets COL3A1 to promote endothelial fibrosis and pulmonary arterial hypertension

Abstract: Germline mutations involving small mothers against decapentaplegic-transforming growth factor-β (SMAD-TGF-β) signaling are an important but rare cause of pulmonary arterial hypertension (PAH), which is a disease characterized, in part, by vascular fibrosis and hyperaldosteronism (ALDO). We developed and analyzed a fibrosis protein-protein network (fibrosome) in silico, which predicted that the SMAD3 target neural precursor cell expressed developmentally down-regulated 9 (NEDD9) is a critical ALDO-regulated node underpinning pathogenic vascular fibrosis. Bioinformatics and microscale thermophoresis demonstrated that oxidation of Cys18 in the SMAD3 docking region of NEDD9 impairs SMAD3-NEDD9 protein-protein interactions in vitro. This effect was reproduced by ALDO-induced oxidant stress in cultured human pulmonary artery endothelial cells (HPAECs), resulting in impaired NEDD9 proteolytic degradation, increased NEDD9 complex formation with Nk2 homeobox 5 (NKX2-5), and increased NKX2-5 binding to COL3A1 Up-regulation of NEDD9-dependent collagen III expression corresponded to changes in cell stiffness measured by atomic force microscopy. HPAEC-derived exosomal signaling targeted NEDD9 to increase collagen I/III expression in human pulmonary artery smooth muscle cells, identifying a second endothelial mechanism regulating vascular fibrosis. ALDO-NEDD9 signaling was not affected by treatment with a TGF-β ligand trap and, thus, was not contingent on TGF-β signaling. Colocalization of NEDD9 with collagen III in HPAECs was observed in fibrotic pulmonary arterioles from PAH patients. Furthermore, NEDD9 ablation or inhibition prevented fibrotic vascular remodeling and pulmonary hypertension in animal models of PAH in vivo. These data identify a critical TGF-β-independent posttranslational modification that impairs SMAD3-NEDD9 binding in HPAECs to modulate vascular fibrosis and promote PAH.

The Landscape of Somatic Genetic Alterations in Breast Cancers From ATM Germline Mutation Carriers.

Abstract: Pathogenic germline variants in ataxia-telangiectasia mutated (ATM), a gene that plays a role in DNA damage response and cell cycle checkpoints, confer an increased breast cancer (BC) risk. Here, we investigated the phenotypic characteristics and landscape of somatic genetic alterations in 24 BCs from ATM germline mutation carriers by whole-exome and targeted sequencing. ATM-associated BCs were consistently hormone receptor positive and largely displayed minimal immune infiltrate. Although 79.2% of these tumors exhibited loss of heterozygosity of the ATM wild-type allele, none displayed high activity of mutational signature 3 associated with defective homologous recombination DNA (HRD) repair. No TP53 mutations were found in the ATM-associated BCs. Analysis of an independent data set confirmed that germline ATM variants and TP53 somatic mutations are mutually exclusive. Our findings indicate that ATM-associated BCs often harbor bi-allelic inactivation of ATM, are phenotypically distinct from BRCA1/2-associated BCs, lack HRD-related mutational signatures, and that TP53 and ATM genetic alterations are likely epistatic.

Growth of MoS2–MoO3 Hybrid Microflowers via Controlled Vapor Transport Process for Efficient Gas Sensing at Room Temperature

Abstract: DOI: 10.1002/admi.201800071 thin devices. From the past few years, transition metal dichalcogenides (TMDCs) materials analogous to graphene have received captivated attention because of their unconventional mechanical, electrical, physical, and structural properties.[1,2] MoS2, being the frontrunner of TMDC family, has opened up new avenues because of its tunable band gap, a great degree of flexibility, high surface to volume ratio, and its chemical and mechanical robustness.[3,4] Consequently, MoS2 has attained importance in the developement of transistor,[5] water splitting,[6] photodiode,[7] and sensing.[8] MoS2 has also been extensively used as a potential gas-sensing material because of its high selectivity, low detection limit, and having various reactive sites such as sulfur defects, edge sites, and vacancies.[9,10] Nonetheless, incomplete recovery and slow detection to gases at room temperature restrict to MoS2 for practical gas sensing. Moreover, a poor charge transport in MoS2 and an adverse effect of ambiental oxygen and humidity represent the MoS2 limitations for use in advanced applications and must be mitigated.[11,12] In recent years, hybrid MoS2 structures with different morphologies have received considerable attention due to their high sensing performance, exceptional optoelectronic relevance, and potential use in several other low-power applications. For instance, Yin et al. synthesized MoS2–MoO3 hybrid nanomaterial using lithium-exfoliation and as a proof-of-concept this hybrid nanomaterial was used as an active layer for light-emitting diodes.[13] Chen et al. synthesized a strain-gated field effect transistor (FET) hybrid structure consisting of 2D MoS2 flake and 1D ZnO nanowire.[14] A MoS2/SnO2 nanohybrids sensor was reported by Cui et al. for high-performance stable gas sensing in air. Here, the hole injection from SnO2 to MoS2 resulted in better stability of MoS2 toward ambiental oxygen.[15] Chen et al. synthesized a core–shell MoO3–MoS2 nanowires structure to drive a stable hydrogen evolution reaction through a highly efficient mechanism.[16] A partially reduced MoO3 has high conductivity and MoS2 has poor conductivity along particular crystallographic direction. So, MoO3 mitigate the the deficiencies of MoS2 after design a particular architecture. All these investigations depicts that the morphology of the hybrid structures crucially influence A nucleation controlled one-step process to synthesize MoS2–MoO3 hybrid microflowers using vapor transport process and its application in efficient NO2 sensing at room temperature are reported. The morphology and crystal structure of the microflowers are characterized by scanning electron microscope (SEM), Raman, X-ray diffraction (XRD), and X-ray photoelectron spectroscopy techniques. A cathodoluminence mapping reveals that the core of the microflower consists of MoO3, and the flower petals as well as nanosheet are composed of a few layers of MoS2. Further, the MoS2–MoO3 hybrid microflower sensor exhibits a high sensitivity of ≈33.6% with a complete recovery to 10 ppm NO2 at room temperature without any extra stimulus like optical or thermal source. Unlike many earlier reports on MoS2 sensor, this advanced approach shows that the sensor is exhibited a low response time (≈19 s) with complete recovery at room tepmerature and excellent selectivity toward NO2 against various other gases. The efficient conventional sensing of the sensor is attributed to a combination of high hole injection from MoO3 to MoS2 and modulation of a potential barrier at MoS2–MoO3 interface during adsorption/ desorption of NO2. It is believed that the modified properties of MoS2 by such composite could be used for various advanced device applications. Room Temperature Sensors

High performance NO2 sensor using MoS2 nanowires network

Abstract: We report on a high-performance NO2 sensor based on a one dimensional MoS2 nanowire (NW) network The MoS2 NW network was synthesized using chemical transport reaction through controlled turbulent vapor flow The crystal structure and surface morphology of MoS2 NWs were confirmed by X-ray diffraction, Raman spectroscopy, X-ray photoelectron spectroscopy, and scanning electron microscopy Further, the sensing behavior of the nanowires was investigated at different temperatures for various concentrations of NO2 and the sensor exhibited about 2-fold enhanced sensitivity with a low detection limit of 46 ppb for NO2 at 60 °C compared to sensitivity at room temperature Moreover, it showed a fast response (16 s) with complete recovery (172 s) at 60 °C, while sensitivity of the device was decreased at 120 °C The efficient sensing with reliable selectivity toward NO2 of the nanowires is attributed to a combination of abundant active edge sites along with a large surface area and tuning of the potential barrier

TERT promoter mutations are associated with poor prognosis and cell immortalization in meningioma.

Abstract: Background Meningiomas are mostly benign tumors tending to progress to higher-grade lesions. Mutations in the telomerase reverse transcriptase (TERT) gene promoter are comparably rare in meningioma, but were recently suggested to predict risk of recurrence and progression. Here we have analyzed a cohort of World Health Organization grades I-III meningiomas regarding the impact of TERT promoter mutations on patient prognosis and in vitro cell propagation feasibility. Methods From 110 meningioma patients, 128 tissue samples were analyzed for the TERT promoter mutations C228T and C250T by direct sequencing. Of the 128 samples, 121 were tested for cell propagation in vitro. Telomerase activity, TERT mRNA expression, and telomere lengths were investigated by telomeric repeat amplification protocol assay, reverse transcription PCR, and quantitative PCR, respectively. Impact of the E-twenty-six (ETS) transcription factor inhibitor YK-4-279 on cell viability and TERT promoter activity was analyzed. Results TERT promoter mutations were found in 5.5% of all samples analyzed and were associated with a significantly upregulated telomerase activity and TERT mRNA expression (P < 0.0001 both). Regarding telomere lengths, no significant difference between the TERT promoter wild-type and mutated subgroups was detected. Patients with TERT promoter mutated tumors exhibited significantly shorter overall survival (P = 0.0006; 53.8 vs 115.6 mo). The presence of TERT promoter mutations but not telomerase activity or TERT mRNA expression predicted indefinite cell growth in vitro. TERT promoter mutated meningioma cells were hypersensitive against the ETS transcription factor inhibitor YK-4-279, inducing a distinct downregulation of TERT promoter activity. Conclusion TERT promoter mutations drive meningioma aggressiveness, resulting in reduced patient survival, but might also open novel therapeutic options for progressive disease.

Loss-of-function mutations in ATP6AP1 and ATP6AP2 in granular cell tumors.

Abstract: Granular cell tumors (GCTs) are rare tumors that can arise in multiple anatomical locations, and are characterized by abundant intracytoplasmic granules. The genetic drivers of GCTs are currently unknown. Here, we apply whole-exome sequencing and targeted sequencing analysis to reveal mutually exclusive, clonal, inactivating somatic mutations in the endosomal pH regulators ATP6AP1 or ATP6AP2 in 72% of GCTs. Silencing of these genes in vitro results in impaired vesicle acidification, redistribution of endosomal compartments, and accumulation of intracytoplasmic granules, recapitulating the cardinal phenotypic characteristics of GCTs and providing a novel genotypic-phenotypic correlation. In addition, depletion of ATP6AP1 or ATP6AP2 results in the acquisition of oncogenic properties. Our results demonstrate that inactivating mutations of ATP6AP1 and ATP6AP2 are likely oncogenic drivers of GCTs and underpin the genesis of the intracytoplasmic granules that characterize them, providing a genetic link between endosomal pH regulation and tumorigenesis.

Fabrication and characterization of highly sensitive and selective sensors based on porous NiO nanodisks

Abstract: Herein, we report the synthesis, characterization and alcohol sensing applications of highly porous NiO nanodisks (NiO-NDs). The nanodisks were synthesized via hydrothermal method and were characterized in detail to examine their morphological, structural, compositional, crystalline and optical properties through different techniques. The typical thickness of the nanodisks was in the range of 15 ± 5 nm while the diagonal dimensions were about 100 ± 20 nm. The electrochemical sensing performances of the synthesized NiO-NDs for different alcohols were subsequently measured by fabricating carbon paste modified electrodes in alkaline medium (CPE/NiO-NDs). For excellent sensing results, the fabricated CPE/NiO-NDs electrodes were standardized for NiO composition, scan rate, the concentration of functional electrode materials etc. Various electroanalytical techniques such as cyclic voltammetry, linear sweep voltammetry and amperometry were employed at different applied potentials to examine the sensing performances of the fabricated sensors. The maximum sensitivity was recorded for CPE/NiO-NDs with 15% NiO composition after 40 scan rates in 0.15 M of NaOH/0.1 M KCl supporting electrolyte. The detailed sensing studies confirmed that the CPE/NiO-NDs (15%) electrode was more sensitive for ethanol as compared to other alcohols. Experimental limit of detection (LOD) and linear dynamic range (LDR) were observed to be 1 mM and 1–47 mM, respectively whereas; the sensitivity of the CPE/NiO-NDs (15%) electrode was recorded to be 3.51 μA mM−1 cm−2 towards ethanol.