R
Raktima Raychowdhury
Researcher at Massachusetts Institute of Technology
Publications - 2
Citations - 15665
Raktima Raychowdhury is an academic researcher from Massachusetts Institute of Technology. The author has contributed to research in topics: RNA-Seq & Ubiquitin ligase. The author has an hindex of 1, co-authored 1 publications receiving 12649 citations.
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Journal ArticleDOI
Full-length transcriptome assembly from RNA-Seq data without a reference genome.
Manfred Grabherr,Brian J. Haas,Moran Yassour,Moran Yassour,Joshua Z. Levin,Dawn Thompson,Ido Amit,Xian Adiconis,Lin Fan,Raktima Raychowdhury,Qiandong Zeng,Zehua Chen,Evan Mauceli,Nir Hacohen,Andreas Gnirke,Nicholas Rhind,Federica Di Palma,Bruce W. Birren,Chad Nusbaum,Kerstin Lindblad-Toh,Kerstin Lindblad-Toh,Nir Friedman,Aviv Regev +22 more
TL;DR: The Trinity method for de novo assembly of full-length transcripts and evaluate it on samples from fission yeast, mouse and whitefly, whose reference genome is not yet available, providing a unified solution for transcriptome reconstruction in any sample.
Posted ContentDOI
Systematically characterizing the roles of E3-ligase family members in inflammatory responses with massively parallel Perturb-seq
Kathryn Geiger-Schuller,Basak Eraslan,Olena Kuksenko,Kushal K. Dey,Karthik A. Jagadeesh,Pratiksha I. Thakore,Ozge Karayel,Andrea R. Yung,Anugraha Rajagopalan,Ana M. Meireles,Karren Yang,Liat Amir-Zilberstein,Toni Delorey,Devan Phillips,Raktima Raychowdhury,Christine Moussion,Alkes L. Price,Nir Hacohen,John G. Doench,Caroline Uhler,Orit Rozenblatt-Rosen,Aviv Regev +21 more
TL;DR: In this article , the function of 1,130 E3 ligases, partners and substrates in the inflammatory response in primary dendritic cells (DCs) was investigated using Perturb-seq.