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Richard McVeigh
Researcher at National Institutes of Health
Publications - 7
Citations - 5038
Richard McVeigh is an academic researcher from National Institutes of Health. The author has contributed to research in topics: RefSeq & GenBank. The author has an hindex of 5, co-authored 7 publications receiving 3230 citations.
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Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
Nuala A. O'Leary,Mathew W. Wright,J. Rodney Brister,Stacy Ciufo,Diana Haddad,Richard McVeigh,Bhanu Rajput,Barbara Robbertse,Brian Smith-White,Danso Ako-adjei,Alexander Astashyn,Azat Badretdin,Yiming Bao,Olga Blinkova,Vyacheslav Brover,Vyacheslav Chetvernin,Jinna Choi,Eric Cox,Olga Ermolaeva,Catherine M. Farrell,Tamara Goldfarb,Tripti Gupta,Daniel H. Haft,Eneida L. Hatcher,Wratko Hlavina,Vinita Joardar,Vamsi K. Kodali,Wenjun Li,Donna Maglott,Patrick Masterson,Kelly M. McGarvey,Michael R. Murphy,Kathleen O'Neill,Shashikant Pujar,Sanjida H. Rangwala,Daniel Rausch,Lillian D. Riddick,Conrad L. Schoch,Andrei Shkeda,Susan S. Storz,Hanzhen Sun,Françoise Thibaud-Nissen,Igor Tolstoy,Raymond E. Tully,Anjana R. Vatsan,Craig Wallin,David Webb,Wendy Wu,Melissa J. Landrum,Avi Kimchi,Tatiana Tatusova,Michael DiCuccio,Paul Kitts,Terence Murphy,Kim D. Pruitt +54 more
TL;DR: The approach to utilizing available RNA-Seq and other data types in the authors' manual curation process for vertebrate, plant, and other species is summarized, and a new direction for prokaryotic genomes and protein name management is described.
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NCBI Taxonomy: a comprehensive update on curation, resources and tools.
Conrad L. Schoch,Stacy Ciufo,Mikhail Domrachev,Carol L. Hotton,Sivakumar Kannan,Rogneda Khovanskaya,Detlef D. Leipe,Richard McVeigh,Kathleen O'Neill,Barbara Robbertse,Shobha Sharma,Vladimir Soussov,John P. Sullivan,Lu Sun,Seán Turner,Ilene Karsch-Mizrachi +15 more
TL;DR: The National Center for Biotechnology Information (NCBI) Taxonomy includes organism names and classifications for every sequence in the nucleotide and protein sequence databases of the International Nucleotide Sequence Database Collaboration.
Journal ArticleDOI
Update on RefSeq microbial genomes resources
Tatiana Tatusova,Stacy Ciufo,Scott Federhen,Boris Fedorov,Richard McVeigh,Kathleen O'Neill,Igor Tolstoy,Leonid Zaslavsky +7 more
TL;DR: Several new features have been added to RefSeq prokaryotic genomes data processing pipeline including the calculation of genome groups (clades) and the optimization of protein clusters generation using pan-genome approach.
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Meeting report: GenBank microbial genomic taxonomy workshop (12–13 May, 2015)
Scott Federhen,Ramon Rosselló-Móra,Hans-Peter Klenk,Brian J. Tindall,Konstantinos T. Konstantinidis,William B. Whitman,Daniel R. Brown,David P. Labeda,David W. Ussery,George M. Garrity,Rita R. Colwell,Nur A. Hasan,Joerg Graf,Aidan Parte,Pablo Yarza,Brittany Goldberg,Heike Sichtig,Ilene Karsch-Mizrachi,Karen Clark,Richard McVeigh,Kim D. Pruitt,Tatiana Tatusova,Robert B. Falk,Sean Turner,Thomas L. Madden,Paul Kitts,Avi Kimchi,William Klimke,Richa Agarwala,Michael DiCuccio,James Ostell +30 more
TL;DR: A plan to find and correct misidentified genomes using genomic comparison statistics together with a scaffold of reliably identified genomes from type to correct them is developed.
Journal ArticleDOI
VecScreen_plus_taxonomy: imposing a tax(onomy) increase on vector contamination screening.
Alejandro A. Schäffer,Eric P. Nawrocki,Yoon La Choi,Paul Kitts,Ilene Karsch-Mizrachi,Richard McVeigh +5 more
TL;DR: Using the retrospective pipeline, this work identified and corrected over 8000 contaminated sequences in the nonredundant nucleotide database and the prospective analysis pipeline has been in production use since April 2017 to evaluate some new GenBank submissions.