R
Rob Knight
Researcher at University of California, San Diego
Publications - 1188
Citations - 322479
Rob Knight is an academic researcher from University of California, San Diego. The author has contributed to research in topics: Microbiome & Biology. The author has an hindex of 201, co-authored 1061 publications receiving 253207 citations. Previous affiliations of Rob Knight include Anschutz Medical Campus & University of Sydney.
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Journal ArticleDOI
Mortality Risk Profiling of Staphylococcus aureus Bacteremia by Multi-omic Serum Analysis Reveals Early Predictive and Pathogenic Signatures.
Jacob M. Wozniak,Robert H. Mills,Joshua Olson,Joshua Olson,J.R. Caldera,J.R. Caldera,Gregory D. Sepich-Poore,Marvic Carrillo-Terrazas,Chih-Ming Tsai,Fernando Vargas,Fernando Vargas,Rob Knight,Pieter C. Dorrestein,Pieter C. Dorrestein,George Y. Liu,Victor Nizet,Victor Nizet,George Sakoulas,Warren E. Rose,David Gonzalez +19 more
TL;DR: This work presents a resource of SaB prognostic biomarkers and interrogated the complexity of serum using multiple computational strategies, which provided a comprehensive view of the early host response to infection.
Posted ContentDOI
Optimizing taxonomic classification of marker gene amplicon sequences
Nicholas A. Bokulich,Benjamin D. Kaehler,Jai Ram Rideout,Matthew R. Dillon,Evan Bolyen,Rob Knight,Gavin A. Huttley,J. Gregory Caporaso +7 more
Journal ArticleDOI
Co-Enriching Microflora Associated with Culture Based Methods to Detect Salmonella from Tomato Phyllosphere
Andrea Ottesen,Antonio Gonzalez,Rebecca L. Bell,Caroline Arce,Steven L. Rideout,Marc W. Allard,Peter Evans,Errol Strain,Steven M. Musser,Rob Knight,Rob Knight,Eric W. Brown,James B. Pettengill +12 more
TL;DR: A baseline description of microflora that co-culture during detection efforts and the utility of a bioinformatic approach to detect specific taxa from metagenomic sequence data are provided to substantiate the nascent utility of metagenomics methods to improve both biological and bioin informatic pathogen detection methods.
Journal ArticleDOI
Migraines Are Correlated with Higher Levels of Nitrate-, Nitrite-, and Nitric Oxide-Reducing Oral Microbes in the American Gut Project Cohort.
TL;DR: Using high-throughput sequencing technologies, observable and significantly higher abundances of nitrate, nitrite, and nitric oxide reductase genes in migraineurs versus nonmigraineurs in samples collected from the oral cavity and a slight but significant difference in fecal samples are detected.
Journal ArticleDOI
Gut microbiome of mothers delivering prematurely shows reduced diversity and lower relative abundance of Bifidobacterium and Streptococcus
Cecilie Dahl,Maggie A. Stanislawski,Nina Iszatt,Siddhartha Mandal,Catherine A. Lozupone,Jose C. Clemente,Rob Knight,Hein Stigum,Merete Eggesbø +8 more
TL;DR: Analysis of maternal gut microbiota using next-generation sequencing shows that low gut diversity, with a distinct microbial composition, is associated with spontaneous preterm delivery.