R
Rob Knight
Researcher at University of California, San Diego
Publications - 1188
Citations - 322479
Rob Knight is an academic researcher from University of California, San Diego. The author has contributed to research in topics: Microbiome & Biology. The author has an hindex of 201, co-authored 1061 publications receiving 253207 citations. Previous affiliations of Rob Knight include Anschutz Medical Campus & University of Sydney.
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Journal ArticleDOI
The 'rare biosphere': a reality check.
Jens Reeder,Rob Knight +1 more
TL;DR: Methods for error correction and classification of metagenomic datasets suggest that the rare biosphere is not as large as previously assumed.
Journal ArticleDOI
Balance Trees Reveal Microbial Niche Differentiation
James T. Morton,Jon G. Sanders,Robert A. Quinn,Daniel McDonald,Antonio Gonzalez,Yoshiki Vázquez-Baeza,Jose A. Navas-Molina,Se Jin Song,Jessica L. Metcalf,Embriette R. Hyde,Manuel E. Lladser,Pieter C. Dorrestein,Rob Knight +12 more
TL;DR: It is shown that balances can yield insights about niche differentiation across multiple microbial environments, including soil environments and lung sputum, and have the potential to reshape how future ecological analyses aimed at revealing differences in relative taxonomic abundances across different samples are carried out.
Journal ArticleDOI
Sources of Bacteria in Outdoor Air across Cities in the Midwestern United States
Robert M. Bowers,Amy P. Sullivan,Elizabeth K. Costello,Jeffrey L. Collett,Rob Knight,Rob Knight,Noah Fierer,Noah Fierer +7 more
TL;DR: Fecal material, most likely dog feces, often represents an unexpected source of bacteria in the atmosphere at more urbanized locations during the winter, showing that Airborne bacteria are clearly an important, but understudied, component of air quality that needs to be better integrated into efforts to measure and model pollutants in the Atmosphere.
Journal ArticleDOI
Emergence and rapid transmission of SARS-CoV-2 B.1.1.7 in the United States.
Nicole L. Washington,Karthik Gangavarapu,Mark Zeller,Alexandre Bolze,Elizabeth T. Cirulli,Kelly M. Schiabor Barrett,Brendan B. Larsen,Catelyn Anderson,Simon R. White,Tyler Cassens,Sharoni Jacobs,Geraint Levan,Jason Nguyen,Jimmy M. Ramirez,Charlotte Rivera-Garcia,Efren Sandoval,Xueqing Wang,David T.W. Wong,Emily Spencer,Refugio Robles-Sikisaka,Ezra Kurzban,Laura D. Hughes,Xianding Deng,Candace Wang,Venice Servellita,Holly Valentine,Peter De Hoff,Phoebe Seaver,Shashank Sathe,Kimberly Gietzen,Brad Sickler,Jay Antico,Kelly Hoon,Jingtao Liu,Aaron Harding,Omid Bakhtar,Tracy Basler,Brett Austin,Duncan MacCannell,Magnus Isaksson,Phillip G. Febbo,David M. Becker,Marc Laurent,Eric McDonald,Gene W. Yeo,Rob Knight,Louise C. Laurent,Eileen de Feo,Michael Worobey,Charles Y. Chiu,Marc A. Suchard,James T. Lu,William E. Lee,Kristian G. Andersen +53 more
TL;DR: In this paper, the authors investigated the prevalence and dynamics of B.1.7 in the United States (US), tracking it back to its early emergence using S gene target failure (SGTF) and SARS-CoV-2 genomic sequencing.
Journal ArticleDOI
Rapid Prefrontal-Hippocampal Habituation to Novel Events
TL;DR: The view that prefrontal and hippocampal regions are involved in rapid automatic detection and habituation to unexpected environmental events and are key elements of the orienting response in humans is supported.