R
Robin A. Ohm
Researcher at Utrecht University
Publications - 85
Citations - 9877
Robin A. Ohm is an academic researcher from Utrecht University. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 40, co-authored 81 publications receiving 7909 citations. Previous affiliations of Robin A. Ohm include Lawrence Berkeley National Laboratory & Joint Genome Institute.
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Journal ArticleDOI
The paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes
Dimitrios Floudas,Manfred Binder,Robert Riley,Kerrie Barry,Robert A. Blanchette,Bernard Henrissat,Ángel T. Martínez,Robert Otillar,Joseph W. Spatafora,Jagjit S. Yadav,Andrea Aerts,Isabelle Benoit,Alexander Boyd,Alexis Carlson,Alex Copeland,Pedro M. Coutinho,Ronald P. de Vries,Patricia Ferreira,Keisha Findley,Brian Foster,Jill Gaskell,Dylan Glotzer,Paweł Górecki,Joseph Heitman,Cedar N. Hesse,Chiaki Hori,Kiyohiko Igarashi,Joel A. Jurgens,Nathan M Kallen,Phil Kersten,Annegret Kohler,Ursula Kües,T. K. Arun Kumar,Alan Kuo,Kurt LaButti,Luis F. Larrondo,Erika Lindquist,Albee Y. Ling,Vincent Lombard,Susan Lucas,Taina Lundell,Rachael Martin,David J. McLaughlin,Ingo Morgenstern,Emanuelle Morin,Claude Murat,László Nagy,Matthew J Nolan,Robin A. Ohm,Aleksandrina Patyshakuliyeva,Antonis Rokas,Francisco J. Ruiz-Dueñas,Grzegorz Sabat,Asaf Salamov,Masahiro Samejima,Jeremy Schmutz,Jason C. Slot,Franz J. St John,Jan Stenlid,Hui Sun,Sheng Sun,Khajamohiddin Syed,Adrian Tsang,Ad Wiebenga,Darcy Young,Antonio G. Pisabarro,Daniel C. Eastwood,Francis Martin,Dan Cullen,Igor V. Grigoriev,David S. Hibbett +70 more
TL;DR: Comparative analyses of 31 fungal genomes suggest that lignin-degrading peroxidases expanded in the lineage leading to the ancestor of the Agaricomycetes, which is reconstructed as a white rot species, and then contracted in parallel lineages leading to brown rot and mycorrhizal species.
Journal ArticleDOI
MycoCosm portal: gearing up for 1000 fungal genomes
Igor V. Grigoriev,Roman Nikitin,Sajeet Haridas,Alan Kuo,Robin A. Ohm,Robert Otillar,Robert Riley,Asaf Salamov,Xueling Zhao,Frank Korzeniewski,Tatyana Smirnova,Henrik P. Nordberg,Inna Dubchak,Igor Shabalov +13 more
TL;DR: MycoCosm is a fungal genomics portal developed by the US Department of Energy Joint Genome Institute to support integration, analysis and dissemination of fungal genome sequences and other 'omics' data by providing interactive web-based tools.
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Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists.
Annegret Kohler,Annegret Kohler,Alan Kuo,László Nagy,László Nagy,Emmanuelle Morin,Emmanuelle Morin,Kerrie Barry,François Buscot,Björn Canbäck,Cindy Choi,Nicolas Cichocki,Nicolas Cichocki,Alicia Clum,Jan V. Colpaert,Alex Copeland,Maurício Dutra Costa,Jeanne Doré,Dimitrios Floudas,Mariangela Girlanda,Bernard Henrissat,Bernard Henrissat,Sylvie Herrmann,Jaqueline Hess,Nils Högberg,Tomas Johansson,Hassine-Radhouane Khouja,Kurt LaButti,Urs Lahrmann,Anthony Levasseur,Erika Lindquist,Anna Lipzen,Roland Marmeisse,Elena Martino,Elena Martino,Claude Murat,Claude Murat,Chew Yee Ngan,Uwe Nehls,Jonathan M. Plett,Jonathan M. Plett,Anne Pringle,Robin A. Ohm,Silvia Perotto,Martina Peter,Robert Riley,Francois Rineau,Francois Rineau,Joske Ruytinx,Asaf Salamov,Firoz Shah,Hui Sun,Mika T. Tarkka,Andrew Tritt,Claire Veneault-Fourrey,Claire Veneault-Fourrey,Alga Zuccaro,Alga Zuccaro,Anders Tunlid,Igor V. Grigoriev,David S. Hibbett,Francis Martin,Francis Martin +62 more
TL;DR: Convergent evolution of the mycorrhizal habit in fungi occurred via the repeated evolution of a 'symbiosis toolkit', with reduced numbers of PCWDEs and lineage-specific suites of myCorrhiza-induced genes.
Journal ArticleDOI
The Genome Portal of the Department of Energy Joint Genome Institute
Igor V. Grigoriev,Henrik P. Nordberg,Igor Shabalov,Andrea Aerts,Michael N. Cantor,David Goodstein,Alan Kuo,Simon Minovitsky,Roman Nikitin,Robin A. Ohm,Robert Otillar,Alexander Poliakov,Igor Ratnere,Robert Riley,Tatyana Smirnova,Daniel S. Rokhsar,Inna Dubchak +16 more
TL;DR: The general organization of the JGI Genome Portal is described and the most recent addition, MycoCosm, a new integrated fungal genomics resource is described.
Journal ArticleDOI
Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi
Robin A. Ohm,Nicolas Feau,Bernard Henrissat,Conrad L. Schoch,Benjamin A. Horwitz,Kerrie Barry,Bradford Condon,Alex Copeland,Braham Dhillon,Fabian Glaser,Cedar N. Hesse,Idit Kosti,Kurt LaButti,Erika Lindquist,Susan Lucas,Asaf Salamov,Rosie E. Bradshaw,Lynda M. Ciuffetti,Richard C. Hamelin,Richard C. Hamelin,Gert H. J. Kema,Christopher B. Lawrence,James A. Scott,Joseph W. Spatafora,B. Gillian Turgeon,Pierre J. G. M. de Wit,Shaobin Zhong,Stephen B. Goodwin,Igor V. Grigoriev +28 more
TL;DR: The Dothideomycetes are one of the largest groups of fungi with a high level of ecological diversity including many plant pathogens infecting a broad range of hosts as mentioned in this paper.