S. Adam Fuller

Bio: S. Adam Fuller is an academic researcher from United States Department of Agriculture. The author has contributed to research in topics: White bass & Hybrid striped bass. The author has an hindex of 8, co-authored 20 publications receiving 190 citations. Previous affiliations of S. Adam Fuller include United States Fish and Wildlife Service & University of Alaska Fairbanks.

Chronic exogenous kisspeptin administration accelerates gonadal development in basses of the genus Morone

Abstract: article i nfo Article history: The present study assesses the effects of chronic administration of peptides to fish, termed kisspeptins, which are the products of the KISS1 and KISS2 genes, and have been shown to control the development of puberty in animals. Using ecologically and commercially important species (white bass, Morone chrysops, striped bass, Morone saxatilis, and their hybrid) as comparative models, we determined that repeated bi-weekly injections (over 7 weeks) differentially accelerate puberty, as evidenced by increases in the prevalence of spermatozoa in the testes of juvenile fish. Moreover, in sexually mature fish, kisspeptin treatment led to increased gonad weight, gonadosomatic index, and spermatocrit in some white and striped bass. Additionally, mature white bass treated with kisspeptins showed an advancement in oocyte development as determined by histological examination. These gonadal changes occurred in the absence of any photothermal manipulation or hormone injections. To date, this is the first description of kisspeptin-mediated pubertal initiation in fish, and the first evidence that kisspeptins could modulate gonad maturation. Although it remains to be determined how kisspeptins may best be utilized in practice, our findings are a basis for future studies to characterize the molecular underpinnings of the KISS system in various fish species.

Efficacy of Bath Treatments of Formalin and Copper Sulfate on Cultured White Bass, Morone chrysops, Concurrently Infected by Onchocleidus mimus and Ichthyophthirius multifiliis

Abstract: Concurrent ectoparasite infections on fishes are commonly encountered in the wild and in aquaculture (Rohde 1984; Hoffman 1999), for example, infections of both Ichthyophthirius multifiliis Fouquet, 1876 (Hymenostomatida: Ichthyopththiriidae; Colorni 2008) and gill‐infecting monogenoids (Platyhelminthes: Monogenoidea; Whittington and Chisholm 2008). The decision to aggressively treat infections of either of these parasites can be prudent in aquaculture systems. Both taxa have direct life cycles and short generation times, which may result in high infection intensities that can debilitate or kill the fish host (Noga 2010). Various chemical therapies have been evaluated to prevent, reduce, or eliminate such infections. Typical treatments for killing monogenoids include: freshwater or saltwater baths, formalin, copper sulfate (CuSO4), hydrogen peroxide, mebendazole, trichlorphon, and praziquantel (Whittington and Chisholm 2008). Treatments for infections of I. multifiliis (Ich) include: temporary exposure to high temperature, formalin, malachite green, CuSO4, potassium permanganate, and sodium chloride (Colorni 2008). Despite the common occurrence of these parasites on fish, little species‐specific information exists for the vast majority of fish–parasite combinations across the diversity of culture systems and captive settings. Formalin is approved by the US Food and Drug Administration (US FDA) for use as a treatment for external monogenetic trematodes in fish at up to 250 mg/L for up to 1 h (US FWS/AFS 2008). The ambiguity of this recommendation suggests a wide therapeutic range with no interpretation of repeated applications. Likewise, little information exists on the safety or efficacy of repeated formalin treatments on fish, and CuSO4 has an indeterminate approval status but is widely accepted as having high efficacy. In October 2009, white bass, Morone chrysops (Rafinesque, 1820; Perciformes: Moronidae), in a flow‐through culture system were diagnosed with concurrent infections of the gill‐infecting monogenoid Onchocleidus mimus (Mueller, 1936; Monogenoidea: Ancyrocephalidae) and Ich. O. mimus has a direct life cycle with no intermediate host required and as the intensity of infection increases can become problematic to a population. This study reports an opportunistic evaluation of the efficacy of repeated applications of formalin and CuSO4 to reduce, control, or eradicate these infections in cultured white bass.

DNA methylation profiles correlated to striped bass sperm fertility

Abstract: Striped bass (Morone saxatilis) spermatozoa are used to fertilize in vitro the eggs of white bass (M. chrysops) to produce the preferred hybrid for the striped bass aquaculture industry. Currently, only one source of domestic striped bass juveniles is available to growers that is not obtained from wild-caught parents and is thus devoid of any genetic improvement in phenotypic traits of importance to aquaculture. Sperm epigenetic modification has been predicted to be associated with fertility, which could switch genes on and off without changing the DNA sequence itself. DNA methylation is one of the most common epigenetic modification types and changes in sperm epigenetics can be correlated to sub-fertility or infertility in male striped bass. The objective of this study was to find the differentially methylated regions (DMRs) between high-fertility and sub-fertility male striped bass, which could potentially regulate the fertility performance. In our present study, we performed DNA methylation analysis of high-fertility and sub-fertility striped bass spermatozoa through MBD-Seq methods. A total of 171 DMRs were discovered in striped bass sperm correlated to fertility. Based on the annotation of these DMRs, we conducted a functional classification analysis and two important groups of genes including the WDR3/UTP12 and GPCR families, were discovered to be related to fertility performance of striped bass. Proteins from the WDR3/UTP12 family are involved in forming the sperm flagella apparatus in vertebrates and GPCRs are involved in hormonal signaling and regulation of tissue development, proliferation and differentiation. Our results contribute insights into understanding the mechanism of fertility in striped bass, which will provide powerful tools to maximize reproductive efficiencies and to identify those males with superior gametes for this important aquaculture species.

Transcriptome annotation and marker discovery in white bass (Morone chrysops) and striped bass (Morone saxatilis)

Abstract: Striped bass (Morone saxatilis) and white bass (Morone chrysops) are the parental species of the hybrid striped bass, a major U.S. aquaculture species. Currently, genomic resources for striped bass, white bass, and their hybrid lag behind those of other aquaculture species. Current resources consist of a medium-density genetic linkage map and a well-annotated ovarian transcriptome. A well-annotated transcriptome from across striped bass and white bass tissues is needed to advance both broad-based RNA-seq studies of gene expression as well as aid in more targeted studies of important genes and pathways critical for reproductive physiology and immunity. Here, we carried out Illumina-based transcriptome sequencing and annotation in both species utilizing the trinity and trinotate packages. The assembled Moronid reference transcriptomes and identified SSRs and SNPs should advance ongoing studies of reproduction, physiology, and immunology in these species and provide markers for broodstock management and selection.

Performance of Commercially Available Passive Integrated Transponder (PIT) Tag Systems Used for Fish Identification and Interjurisdictional Fisheries Management

Abstract: Passive integrated transponder (PIT) tag systems are commonly used in identification and monitoring programs with fisheries applications Transponders of different frequencies, sizes, and code formats are available from numerous manufacturers, and there is increasing concern regarding the need to coordinate tagging efforts with appropriate equipment Given the high cost of PIT tag systems and the adverse management implications of using incompatible equipment, we evaluated the performance of 20 transponder models and 11 transceiver models currently used in the United States Compatibility among transceivers ranged from 14% to 81% when evaluated with the 20 transponders in this study The maximum read distance across all tags and tag readers averaged 95 cm (range, 20–313 cm), and there were significant differences among reader and tag type combinations Both transponder size and frequency significantly affected the maximum read distance, but transceiver model choice appeared to allow for the gr

The kiss/kissr Systems Are Dispensable for Zebrafish Reproduction: Evidence From Gene Knockout Studies

Abstract: The kiss1/gpr54 signaling system is considered to be a critical regulator of reproduction in most vertebrates. However, this presumption has not been tested vigorously in nonmammalian vertebrates. Distinct from mammals, multiple kiss1/gpr54 paralogous genes (kiss/kissr) have been identified in nonmammalian vertebrates, raising the possibility of functional redundancy among these genes. In this study, we have systematically generated the zebrafish kiss1(-/-), kiss2(-/-), and kiss1(-/-); kiss2-/- mutant lines as well as the kissr1(-/-), kissr2(-/-), and kissr1(-/-); kissr2(-/-) mutant lines using transcription activator-like effector nucleases. We have demonstrated that spermatogenesis and folliculogenesis as well as reproductive capability are not impaired in all of these 6 mutant lines. Collectively, our results indicate that kiss/kissr signaling is not absolutely required for zebrafish reproduction, suggesting that the kiss/kissr systems play nonessential roles for reproduction in certain nonmammalian vertebrates. These findings also demonstrated that fish and mammals have evolved different strategies for neuroendocrine control of reproduction.

Aquaculture genomics, genetics and breeding in the United States: current status, challenges, and priorities for future research

Abstract: Advancing the production efficiency and profitability of aquaculture is dependent upon the ability to utilize a diverse array of genetic resources. The ultimate goals of aquaculture genomics, genetics and breeding research are to enhance aquaculture production efficiency, sustainability, product quality, and profitability in support of the commercial sector and for the benefit of consumers. In order to achieve these goals, it is important to understand the genomic structure and organization of aquaculture species, and their genomic and phenomic variations, as well as the genetic basis of traits and their interrelationships. In addition, it is also important to understand the mechanisms of regulation and evolutionary conservation at the levels of genome, transcriptome, proteome, epigenome, and systems biology. With genomic information and information between the genomes and phenomes, technologies for marker/causal mutation-assisted selection, genome selection, and genome editing can be developed for applications in aquaculture. A set of genomic tools and resources must be made available including reference genome sequences and their annotations (including coding and non-coding regulatory elements), genome-wide polymorphic markers, efficient genotyping platforms, high-density and high-resolution linkage maps, and transcriptome resources including non-coding transcripts. Genomic and genetic control of important performance and production traits, such as disease resistance, feed conversion efficiency, growth rate, processing yield, behaviour, reproductive characteristics, and tolerance to environmental stressors like low dissolved oxygen, high or low water temperature and salinity, must be understood. QTL need to be identified, validated across strains, lines and populations, and their mechanisms of control understood. Causal gene(s) need to be identified. Genetic and epigenetic regulation of important aquaculture traits need to be determined, and technologies for marker-assisted selection, causal gene/mutation-assisted selection, genome selection, and genome editing using CRISPR and other technologies must be developed, demonstrated with applicability, and application to aquaculture industries. Major progress has been made in aquaculture genomics for dozens of fish and shellfish species including the development of genetic linkage maps, physical maps, microarrays, single nucleotide polymorphism (SNP) arrays, transcriptome databases and various stages of genome reference sequences. This paper provides a general review of the current status, challenges and future research needs of aquaculture genomics, genetics, and breeding, with a focus on major aquaculture species in the United States: catfish, rainbow trout, Atlantic salmon, tilapia, striped bass, oysters, and shrimp. While the overall research priorities and the practical goals are similar across various aquaculture species, the current status in each species should dictate the next priority areas within the species. This paper is an output of the USDA Workshop for Aquaculture Genomics, Genetics, and Breeding held in late March 2016 in Auburn, Alabama, with participants from all parts of the United States.

Pelagic fish and zooplankton species assemblages in relation to water mass characteristics in the northern Bering and southeast Chukchi seas

Abstract: This research explores the distributions and community composition of pelagic species in the sub-Arctic and Arctic waters of the northern Bering and central and southern Chukchi seas during September 2007 by linking pelagic zooplankton and fish assemblages to water masses Juvenile saffron cod (Eleginus gracilis), polar cod (Boreogadus saida), and shorthorn sculpin (Myoxocephalus scorpius) were most abundant in warm, low salinity Alaska Coastal Water (ACW) of the central Chukchi Sea, characterized by low chlorophyll, low nutrients, and small zooplankton taxa Adult Pacific herring (Clupea pallasii) were more abundant in the less stratified Bering Strait waters and in the colder, saltier Bering Shelf Water of the northern Bering and southern Chukchi seas, characterized by high chlorophyll, high nutrients, and larger zooplankton taxa Juvenile pink (Oncorhynchus gorbuscha) and chum (O keta) salmon were most abundant in the less stratified ACW in the central Chukchi Sea and Bering Strait Abundances of large zooplankton were dominated by copepods (Eucalanus bungii, Calanus glacialis/marshallae, Metridia pacifica) followed by euphausiids (juvenile Thysanoessa raschii and unidentified taxa), whereas small zooplankton were dominated by bivalve larvae and copepods (Centropages abdominalis, Oithona similis, Pseudocalanus sp) Pelagic community composition was related to environmental factors, with highest correlations between bottom salinity and large zooplankton taxa, and latitude and fish species These data were collected in a year with strong northward retreat of summer sea ice and therefore provide a baseline for assessing the effects of future climate warming on pelagic ecosystems in sub-Arctic and Arctic regions

Adaptive strategies and life history characteristics in a warming climate: salmon in the Arctic?

Abstract: In the warming Arctic, aquatic habitats are in flux and salmon are exploring their options. Adult Pacific salmon, including sockeye (Oncorhynchus nerka), coho (O. kisutch), Chinook (O. tshawytscha), pink (O. gorbuscha) and chum (O. keta) have been captured throughout the Arctic. Pink and chum salmon are the most common species found in the Arctic today. These species are less dependent on freshwater habitats as juveniles and grow quickly in marine hab- itats. Putative spawning populations are rare in the North American Arctic and limited to pink salmon in drainages north of Point Hope, Alaska, chum salmon spawning rivers draining to the northwestern Beaufort Sea, and small populations of chum and pink salmon in Canada's Mackenzie River. Pacific salmon have colonized several large river basins draining to the Kara, Laptev and East Siberian seas in the Russian Arctic. These populations probably developed from hatchery supplementation efforts in the 1960's. Hundreds of populations of Arctic Atlantic salmon (Salmo salar) are found in Russia, Norway and Finland. Atlantic salmon have extended their range eastward as far as the Kara Sea in central Russian. A small native population of Atlantic salmon is found in Canada's Ungava Bay. The northern tip of Quebec seems to be an Atlantic salmon migration barrier for other North American stocks. Compatibility between life history requirements and ecological conditions are prerequisite for salmon colonizing Arctic habitats. Broad-scale predictive models of climate change in the Arctic give little information about feedback pro- cesses contributing to local conditions, especially in freshwater systems. This paper reviews the recent history of salmon in the Arctic and explores various patterns of climate change that may influence range expansions and future sustainability of salmon in Arc- tic habitats. A summary of the research needs that will allow informed expectation of further Arctic coloniza- tion by salmon is given.