S
Salvador Capella-Gutierrez
Researcher at Barcelona Supercomputing Center
Publications - 58
Citations - 12824
Salvador Capella-Gutierrez is an academic researcher from Barcelona Supercomputing Center. The author has contributed to research in topics: Gene & Computer science. The author has an hindex of 25, co-authored 50 publications receiving 9484 citations. Previous affiliations of Salvador Capella-Gutierrez include Catalan Institution for Research and Advanced Studies & Pompeu Fabra University.
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Journal ArticleDOI
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
TL;DR: TrimAl is a tool for automated alignment trimming, which is especially suited for large-scale phylogenetic analyses and can automatically select the parameters to be used in each specific alignment so that the signal-to-noise ratio is optimized.
Journal ArticleDOI
Whole-genome analyses resolve early branches in the tree of life of modern birds
Erich D. Jarvis,Siavash Mirarab,Andre J. Aberer,Bo Li,Bo Li,Bo Li,Peter Houde,Cai Li,Cai Li,Simon Y. W. Ho,Brant C. Faircloth,Benoit Nabholz,Jason T. Howard,Alexander Suh,Claudia C. Weber,Rute R. da Fonseca,Jianwen Li,Fang Zhang Zhang,Hui Li,Long Zhou,Nitish Narula,Nitish Narula,Liang Liu,Ganesh Ganapathy,Bastien Boussau,Shamsuzzoha Bayzid,Volodymyr Zavidovych,Sankar Subramanian,Toni Gabaldón,Salvador Capella-Gutierrez,Jaime Huerta-Cepas,Bhanu Rekepalli,Bhanu Rekepalli,Kasper Munch,Mikkel H. Schierup,Bent E. K. Lindow,Wesley C. Warren,David A. Ray,Richard E. Green,Michael William Bruford,Xiangjiang Zhan,Xiangjiang Zhan,Andrew Dixon,Shengbin Li,Ning Li,Yinhua Huang,Elizabeth P. Derryberry,Elizabeth P. Derryberry,Mads F. Bertelsen,Frederick H. Sheldon,Robb T. Brumfield,Claudio V. Mello,Claudio V. Mello,Peter V. Lovell,Morgan Wirthlin,Maria Paula Cruz Schneider,Francisco Prosdocimi,José Alfredo Samaniego,Amhed Missael Vargas Velazquez,Alonzo Alfaro-Núñez,Paula F. Campos,Bent O. Petersen,Thomas Sicheritz-Pontén,An Pas,Thomas L. Bailey,R. Paul Scofield,Michael Bunce,David M. Lambert,Qi Zhou,Polina L. Perelman,Amy C. Driskell,Beth Shapiro,Zijun Xiong,Yongli Zeng,Shiping Liu,Zhenyu Li,Binghang Liu,Kui Wu,Jin Xiao,Xiong Yinqi,Quiemei Zheng,Yong Zhang,Huanming Yang,Jian Wang,Linnéa Smeds,Frank E. Rheindt,Michael J. Braun,Jon Fjeldså,Ludovic Orlando,F. Keith Barker,Knud A. Jønsson,Warren E. Johnson,Klaus-Peter Koepfli,Stephen J. O'Brien,David Haussler,Oliver A. Ryder,Carsten Rahbek,Eske Willerslev,Gary R. Graves,Gary R. Graves,Travis C. Glenn,John E. McCormack,Dave Burt,Hans Ellegren,Per Alström,Scott V. Edwards,Alexandros Stamatakis,David P. Mindell,Joel Cracraft,Edward L. Braun,Tandy Warnow,Tandy Warnow,Wang Jun,M. Thomas P. Gilbert,M. Thomas P. Gilbert,Guojie Zhang,Guojie Zhang +116 more
TL;DR: A genome-scale phylogenetic analysis of 48 species representing all orders of Neoaves recovered a highly resolved tree that confirms previously controversial sister or close relationships and identifies the first divergence in Neoaves, two groups the authors named Passerea and Columbea.
Journal ArticleDOI
The genome of melon (Cucumis melo L.)
Jordi Garcia-Mas,Andrej Benjak,Walter Sanseverino,Michael Bourgeois,Gisela Mir,Víctor M. González,Elizabeth Henaff,Francisco Câmara,Luca Cozzuto,Ernesto Lowy,Tyler Alioto,Salvador Capella-Gutierrez,José Blanca,Joaquín Cañizares,Pello Ziarsolo,Daniel Gonzalez-Ibeas,Luis Rodriguez-Moreno,Marcus Droege,Lei Du,Miguel Álvarez-Tejado,Belen Lorente-Galdos,Marta Melé,Marta Melé,Luming Yang,Yiqun Weng,Arcadi Navarro,Tomas Marques-Bonet,Miguel A. Aranda,Fernando Nuez,Belén Picó,Toni Gabaldón,Guglielmo Roma,Roderic Guigó,Josep M. Casacuberta,Pere Arús,Pere Puigdomènech +35 more
TL;DR: The data suggest that transposon amplification may in part explain the increased size of the melon genome compared with the close relative cucumber, and a low number of nucleotide-binding site–leucine-rich repeat disease resistance genes were annotated, suggesting the existence of specific defense mechanisms in this species.
Journal ArticleDOI
The genome of the recently domesticated crop plant sugar beet ( Beta vulgaris )
Juliane C. Dohm,André E. Minoche,Daniela Holtgräwe,Salvador Capella-Gutierrez,Falk Zakrzewski,Hakim Tafer,Oliver Rupp,Thomas Rosleff Sörensen,Ralf Stracke,Richard Reinhardt,Alexander Goesmann,Thomas Kraft,Britta Schulz,Peter F. Stadler,Thomas Schmidt,Toni Gabaldón,Hans Lehrach,Bernd Weisshaar,Heinz Himmelbauer +18 more
TL;DR: A reference genome sequence for sugar beet is presented as the first non-rosid, non-asterid eudicot genome, advancing comparative genomics and phylogenetic reconstructions and provides evidence for the separation of Caryophyllales before the split of asterids and rosids, and revealed lineage-specific gene family expansions and losses.
Journal ArticleDOI
Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs
Richard E. Green,Edward L. Braun,Joel Armstrong,Dent Earl,Ngan Nguyen,Glenn Hickey,Michael W. Vandewege,John St. John,Salvador Capella-Gutierrez,Todd A. Castoe,Todd A. Castoe,Colin Kern,Matthew K. Fujita,Juan C. Opazo,Jerzy Jurka,Kenji K. Kojima,Juan Caballero,Robert Hubley,Arian F.A. Smit,Roy N. Platt,Christine A. Lavoie,Meganathan P. Ramakodi,John W. Finger,Alexander Suh,Alexander Suh,Sally R. Isberg,Lee G. Miles,Amanda Y. Chong,Weerachai Jaratlerdsiri,Jaime Gongora,Chris Moran,Andrés Iriarte,John E. McCormack,Shane C. Burgess,Scott V. Edwards,Eric Lyons,Christina L. Williams,Matthew Breen,Jason T. Howard,Cathy R. Gresham,Daniel G. Peterson,Juergen Schmitz,David D. Pollock,David Haussler,David Haussler,Eric W. Triplett,Guojie Zhang,Naoki Irie,Erich D. Jarvis,Christopher A. Brochu,Carl J. Schmidt,Fiona M. McCarthy,Brant C. Faircloth,Brant C. Faircloth,Federico G. Hoffmann,Travis C. Glenn,Toni Gabaldón,Toni Gabaldón,Benedict Paten,David A. Ray,David A. Ray +60 more
TL;DR: An exceptionally slow rate of genome evolution within crocodilians at all levels is observed, consistent with a single underlying cause of a reduced rate of evolutionary change rather than intrinsic differences in base repair machinery.