S
Samuel W. Cartinhour
Researcher at United States Department of Agriculture
Publications - 39
Citations - 7175
Samuel W. Cartinhour is an academic researcher from United States Department of Agriculture. The author has contributed to research in topics: Pseudomonas syringae & Genome. The author has an hindex of 27, co-authored 39 publications receiving 6865 citations. Previous affiliations of Samuel W. Cartinhour include Cornell University & Agricultural Research Service.
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Journal ArticleDOI
Computational and Experimental Analysis of Microsatellites in Rice (Oryza sativa L.): Frequency, Length Variation, Transposon Associations, and Genetic Marker Potential
Svetlana V. Temnykh,Genevieve DeClerck,Angelika Lukashova,Leonard Lipovich,Samuel W. Cartinhour,Susan R. McCouch +5 more
TL;DR: A set of 200 Class I SSR markers was developed and integrated into the existing microsatellite map of rice, providing immediate links between the genetic, physical, and sequence-based maps.
Journal ArticleDOI
Development and Mapping of 2240 New SSR Markers for Rice ( Oryza sativa L.)
Susan R. McCouch,Leonid Teytelman,Yunbi Xu,Katarzyna B. Lobos,Karen Clare,Mark Walton,Binying Fu,Reycel Maghirang,Zhikang Li,Yongzhong Xing,Qifa Zhang,Izumi Kono,Masahiro Yano,R. G. Fjellstrom,Genevieve DeClerck,David J. Schneider,Samuel W. Cartinhour,Doreen Ware,Lincoln Stein +18 more
TL;DR: A total of 2740 experimentally confirmed SSR markers for rice are made available, or approximately one SSR every 157 kb, with AT-rich microsatellites had the longest average repeat tracts, while GC-rich motifs were the shortest.
Journal ArticleDOI
The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000
C. Robin Buell,Vinita Joardar,Magdalen Lindeberg,Jeremy D. Selengut,Ian T. Paulsen,Michelle L. Gwinn,Robert J. Dodson,Robert T. DeBoy,A. Scott Durkin,James F. Kolonay,Ramana Madupu,Sean C. Daugherty,Lauren M. Brinkac,Maureen J. Beanan,Daniel H. Haft,William C. Nelson,Tanja M. Davidsen,Nikhat Zafar,Liwei Zhou,Jia Liu,Qiaoping Yuan,Hoda Khouri,Nadia Fedorova,Bao Tran,Daniel A. Russell,Kristi Berry,Teresa Utterback,Susan Van Aken,Tamara Feldblyum,Mark D'Ascenzo,Wen Ling Deng,Adela R. Ramos,James R. Alfano,Samuel W. Cartinhour,Arun K. Chatterjee,Terrence P. Delaney,Sondra G. Lazarowitz,Gregory B. Martin,David J. Schneider,Xiaoyan Tang,Carol L. Bender,Owen White,Claire M. Fraser,Alan Collmer +43 more
TL;DR: The complete genome sequence of the model bacterial pathogen Pseudomonas syringae pathovar tomato DC3000 (DC3000), which is pathogenic on tomato and Arabidopsis thaliana, is reported and 1,159 genes unique to DC3000 are revealed, of which 811 lack a known function.
Journal ArticleDOI
Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5
Ian T. Paulsen,Caroline M. Press,Jacques Ravel,Donald Y. Kobayashi,Garry S. A. Myers,Dmitri V. Mavrodi,Robert T. DeBoy,Rekha Seshadri,Qinghu Ren,Ramana Madupu,Robert J. Dodson,A. Scott Durkin,Lauren M. Brinkac,Sean C. Daugherty,Stephen A Sullivan,M. J. Rosovitz,Michelle L. Gwinn,Liwei Zhou,Davd J Schneider,Samuel W. Cartinhour,William C. Nelson,Janice Weidman,Kisha Watkins,Kevin Tran,Hoda Khouri,Elizabeth A. Pierson,Leland S. Pierson,Linda S. Thomashow,Joyce E. Loper +28 more
TL;DR: Various features that contribute to its commensal lifestyle on plants, including broad catabolic and transport capabilities for utilizing plant-derived compounds, the apparent ability to use a diversity of iron siderophores, detoxification systems to protect from oxidative stress, and the lack of a type III secretion system and toxins found in related pathogens are identified.
Journal ArticleDOI
Genomewide identification of Pseudomonas syringae pv. tomato DC3000 promoters controlled by the HrpL alternative sigma factor.
Derrick E. Fouts,Robert B. Abramovitch,James R. Alfano,Angela M. Baldo,C. Robin Buell,Samuel W. Cartinhour,Arun K. Chatterjee,Mark D'Ascenzo,Michelle L. Gwinn,Sondra G. Lazarowitz,Nai-Chun Lin,Gregory B. Martin,Amos H. Rehm,David J. Schneider,David J. Schneider,Karin V. van Dijk,Xiaoyan Tang,Alan Collmer +17 more
TL;DR: A draft sequence of DC3000 is developed and an iterative process involving computational and gene expression techniques to identify virulence-implicated genes downstream of HrpL-responsive promoters is used to identify genes involved in pathogenesis.