Sathyanarayana N. Gummadi

Bio: Sathyanarayana N. Gummadi is an academic researcher from Indian Institute of Technology Madras. The author has contributed to research in topics: Phospholipid scramblase & Caffeine. The author has an hindex of 25, co-authored 139 publications receiving 2332 citations. Previous affiliations of Sathyanarayana N. Gummadi include Indian Institutes of Technology & University of Wisconsin-Madison.

GroES and GroEL are essential chaperones for refolding of recombinant human phospholipid scramblase 1 in E. coli

Abstract: Human phospholipid scramblase 1(hPLSCR1), when expressed in E. coli (BL-21 DE3), forms inclusion bodies that are functionally inactive. We studied the effects of various stress inducing agents and chaperones on soluble expression of hPLSCR1 in E. coli (BL-21 DE3). Addition of 3% (v/v) ethanol before induction and decreasing the post-induction temperature to 15°C increased the solubility of hPLSCR1 to ~10 and ~15% respectively. Presence of groES-groEL complex solubilized the hPLSCR1 to ~30% of the total hPLSCR1. Absence of groES-groEL did not improve the solubility of hPLSCR1 suggesting that groES and groEL are the essential chaperones for the correct folding of hPLSCR1 when over-expressed in E. coli.

Screening of new yeast Pichia manchurica for arabitol production

Abstract: Arabitol has several applications in food and pharmaceutical industries as a natural sweetener, dental caries inhibitor, and texturing agent. Newly isolated yeast strains from seawater, sugarcane plantation soil samples, and Zygosaccharomyces rouxii 2635 from MTCC were tested for arabitol production. The yield of arabitol was found to be higher in seawater isolate (24.6 g L-1 ) compared to two soil isolates (22.5 g L-1 ) and Z. rouxii (19.4 g L-1 ). Based on ITS 26S rDNA sequence analysis, the seawater isolate was identified as Pichia manchurica. In the present study, the effect of different substrates, trace elements, nitrogen sources, pH, and temperature on arabitol production was examined. Three different carbon sources viz. glucose, arabinose, and galactose were studied. Glucose was determined to be the best substrate for arabitol production (27.6 g L-1 ) followed by arabinose (13.7 g L-1 ) and galactose (7.7 g L-1 ). Maximum production of arabitol was observed at pH 6.0 (34.7 g L-1 ). In addition, arabitol production was high (35.7 g L-1 ) at temperature of 30 °C. Among the different concentrations of ammonium sulfate tested (3, 4.5, 6, 7.5, and 9 g L-1 ) concentration of 6 g L-1 resulted in higher arabitol Individual metal ions had no effect on arabitol production by this strain as compared to control. Results obtained in this study identify ways for improved arabitol production with natural isolates using microbial processes.

How induced cells of Pseudomonas sp. increase the degradation of caffeine

Abstract: Decaffeination is an important process for the removal of caffeine from wastes generated by coffee and tea industries. Microbial degradation of caffeine is more useful than conventional chemical treatment because of its low cost and because it does not involve the use of toxic solvents. However, biodegradation of caffeine remains a problem because of the difficulty of finding a strain that can resist high concentration of caffeine in addition to be able to degrade caffeine at higher rates. In this study, we used the induced cells of Pseudomonas sp. for the degradation of caffeine. The induced cells (8 mg/ml) showed complete degradation of a initial concentration of caffeine of 1.2 g/l in 6 hours. The optimum pH was 7.0, the agitation rate was 180 rpm and the optimum temperature for degradation was 35 °C. Under these conditions and in the presence of magnesium, complete degradation of 1.2 g/l of caffeine was accomplished in 4 hours. Additional trials determined that induced cells completely degraded an initial concentration of caffeine of 10 g/l in 26 hours. This is the first report on a strain that can degrade high concentrations of caffeine (e.g., 10 g/l) at the maximum rate of 0.385 g/l per hour. These results suggest that the strain can be used to successfully in developing a biological process for the degradation of caffeine.

A Statistical Approach to Optimize Xylitol Production by Debaryomyces nepalensis NCYC 3413 in Vitro

Abstract: Debaryomyces nepalensis NCYC 3413, halotolerant yeast isolated from rotten apple, was capable of utilizing components of hemicellulose hydrolysate such as glucose, galactose, mannose, xylose and arabinose. The organism utilizes xylose as a sole carbon source and produces xylitol. The Plackett-Burman design was applied to determine the specific medium components affecting xylitol production and found that xylose, K2HPO4, and ZnSO4 were critical in augmenting xylitol production. These significant parameters were further optimized using response surface methodology. The optimum concentrations of xylose, K2HPO4, and ZnSO4 were found to be 100 g/l, 10.6 g/l and 8.9 mg/l respectively. Under these optimal conditions the xylitol production increased from 27 g/l to 36 g/l with a yield of 0.44 g/g (57% increase in total yield). In addition, formation of the by product (glycerol) was decreased under optimal conditions.

Bioconversion of Non-Detoxified Hemicellulose Hydrolysates to Xylitol byHalotolerant Yeast Debaryomyces nepalensis NCYC 3413

Abstract: Lignocellulosic materials are one of the most abundant renewable resources whose exploitation for the production of biochemicals and biofuels is the major challenge in the area of industrial biotechnology due to inhibition of growth and product formation by the toxic compounds released upon their hydrolysis. Indeed the bioprocess that can produce industrial products from hemicellulose hydrolysates in the presence of toxic compounds is economical than the process which involves detoxification. In this study, the ability of halotolerant strain Debaryomyces nepalensis NCYC 3413 to convert non-detoxified xylose enriched hemicellulose hydrolysates from corn cobs, rice straw, sugarcane bagasse and wheat straw to xylitol was evaluated. It was found that this strain has the capability to grow in all hemicellulose hydrolysates and convert xylose to xylitol without detoxification of hydrolysates. The maximum xylitol concentration of 14.6 g L-1 was obtained from corn cobs and wheat straw with productivities of 0.16 and 0.20 g L-1 h-1 respectively at a yield of 0.30 g g-1. Whereas sugarcane bagasse and rice straw gave xylitol yields of 0.31 and 0.32 g g-1 respectively with 14.2 g L-1 maximum xylitol and productivities were calculated to be 0.20 and 0.15 g L-1 h-1 respectively. The presence of high glucose hindered xylitol production by producing ethanol. Based on our findings, we suggest that (i) D. nepalensis is a promising strain for ecofriendly xylitol production as it exhibits broad specificity to lignocellulose substrates, fermentation of mixed sugars and (ii) tolerance towards lignocellulosic inhibitors making the process more economical.

Bacterial extracellular polysaccharides involved in biofilm formation.

Abstract: Extracellular polymeric substances (EPS) produced by microorganisms are a complex mixture of biopolymers primarily consisting of polysaccharides, as well as proteins, nucleic acids, lipids and humic substances. EPS make up the intercellular space of microbial aggregates and form the structure and architecture of the biofilm matrix. The key functions of EPS comprise the mediation of the initial attachment of cells to different substrata and protection against environmental stress and dehydration. The aim of this review is to present a summary of the current status of the research into the role of EPS in bacterial attachment followed by biofilm formation. The latter has a profound impact on an array of biomedical, biotechnology and industrial fields including pharmaceutical and surgical applications, food engineering, bioremediation and biohydrometallurgy. The diverse structural variations of EPS produced by bacteria of different taxonomic lineages, together with examples of biotechnological applications, are discussed. Finally, a range of novel techniques that can be used in studies involving biofilm-specific polysaccharides is discussed.

The distribution and function of phosphatidylserine in cellular membranes.

Abstract: Phosphatidylserine (PS) is the most abundant negatively charged phospholipid in eukaryotic membranes. PS directs the binding of proteins that bear C2 or gamma-carboxyglutamic domains and contributes to the electrostatic association of polycationic ligands with cellular membranes. Rather than being evenly distributed, PS is found preferentially in the inner leaflet of the plasma membrane and in endocytic membranes. The loss of PS asymmetry is an early indicator of apoptosis and serves as a signal to initiate blood clotting. This review discusses the determinants and functional implications of the subcellular distribution and membrane topology of PS.