S
Satria A. Kautsar
Researcher at Wageningen University and Research Centre
Publications - 24
Citations - 2776
Satria A. Kautsar is an academic researcher from Wageningen University and Research Centre. The author has contributed to research in topics: Genome & Biology. The author has an hindex of 12, co-authored 18 publications receiving 1652 citations. Previous affiliations of Satria A. Kautsar include Bandung Institute of Technology & Lampung University.
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Journal ArticleDOI
antiSMASH 4.0-improvements in chemistry prediction and gene cluster boundary identification.
Kai Blin,Thomas Wolf,Marc G. Chevrette,Xiaowen Lu,Christopher J. Schwalen,Satria A. Kautsar,Hernando G. Suarez Duran,Emmanuel L. C. de los Santos,Hyun Uk Kim,Mariana Nave,Jeroen S. Dickschat,Douglas A. Mitchell,Ekaterina Shelest,Rainer Breitling,Eriko Takano,Sang Yup Lee,Tilmann Weber,Marnix H. Medema +17 more
TL;DR: The thoroughly updated antiSMASH version 4 is presented, which adds several novel features, including prediction of gene cluster boundaries using the ClusterFinder method or the newly integrated CASSIS algorithm, improved substrate specificity prediction for non-ribosomal peptide synthetase adenylation domains based on the new SANDPUMA algorithm, and several usability features have been updated and improved.
Journal ArticleDOI
A computational framework to explore large-scale biosynthetic diversity
Jorge C. Navarro-Muñoz,Nelly Selem-Mojica,Michael W. Mullowney,Satria A. Kautsar,James H. Tryon,Elizabeth I. Parkinson,Elizabeth I. Parkinson,Emmanuel L. C. de los Santos,Marley Yeong,Pablo Cruz-Morales,Sahar Abubucker,Arne Roeters,Wouter Lokhorst,Antonio Fernandez-Guerra,Antonio Fernandez-Guerra,Antonio Fernandez-Guerra,Luciana Teresa Dias Cappelini,Anthony W. Goering,Regan J. Thomson,William W. Metcalf,Neil L. Kelleher,Francisco Barona-Gómez,Marnix H. Medema +22 more
TL;DR: Two bioinformatic tools enable sequence similarity network and phylogenetic analysis of gene clusters and their families across hundreds of strains and in large datasets, leading to the discovery of new natural products.
Journal ArticleDOI
MIBiG 2.0: a repository for biosynthetic gene clusters of known function.
Satria A. Kautsar,Kai Blin,Simon Shaw,Jorge C. Navarro-Muñoz,Barbara R. Terlouw,Justin J. J. van der Hooft,Jeffrey A. van Santen,Vittorio Tracanna,Hernando G. Suarez Duran,Victòria Pascal Andreu,Nelly Selem-Mojica,Mohammad Alanjary,Serina L. Robinson,George Lund,Samuel C. Epstein,Ashley C. Sisto,Louise K. Charkoudian,Jérôme Collemare,Roger G. Linington,Tilmann Weber,Marnix H. Medema +20 more
TL;DR: MIBiG 2.0 is presented, which encompasses major updates to the schema, the data, and the online repository itself, and improves the user experience by adding new features such as query searches and a statistics page, and enabled direct link-outs to chemical structure databases.
Journal ArticleDOI
plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters
Satria A. Kautsar,Satria A. Kautsar,Hernando G. Suarez Duran,Kai Blin,Anne Osbourn,Marnix H. Medema +5 more
TL;DR: Applied on 48 high-quality plant genomes, plantiSMASH identifies a rich diversity of candidate plant BGCs, spurred by the continuing decrease in costs of plant genome sequencing, they will allow genome mining technologies to be applied to plant natural product discovery.
Journal ArticleDOI
BiG-FAM : the biosynthetic gene cluster families database
TL;DR: BiG-FAM is presented, a database of 29,955 GCFs capturing the global diversity of 1,225,071 BGCs predicted from 209,206 publicly available microbial genomes and metagenome-assembled genomes (MAGs).