Scott C. Doney

Bio: Scott C. Doney is an academic researcher from University of Virginia. The author has contributed to research in topics: Climate change & Phytoplankton. The author has an hindex of 111, co-authored 406 publications receiving 59218 citations. Previous affiliations of Scott C. Doney include Woods Hole Oceanographic Institution & National Center for Atmospheric Research.

Anthropogenic ocean acidification over the twenty-first century and its impact on calcifying organisms

Abstract: Today's surface ocean is saturated with respect to calcium carbonate, but increasing atmospheric carbon dioxide concentrations are reducing ocean pH and carbonate ion concentrations, and thus the level of calcium carbonate saturation. Experimental evidence suggests that if these trends continue, key marine organisms—such as corals and some plankton—will have difficulty maintaining their external calcium carbonate skeletons. Here we use 13 models of the ocean–carbon cycle to assess calcium carbonate saturation under the IS92a 'business-as-usual' scenario for future emissions of anthropogenic carbon dioxide. In our projections, Southern Ocean surface waters will begin to become undersaturated with respect to aragonite, a metastable form of calcium carbonate, by the year 2050. By 2100, this undersaturation could extend throughout the entire Southern Ocean and into the subarctic Pacific Ocean. When live pteropods were exposed to our predicted level of undersaturation during a two-day shipboard experiment, their aragonite shells showed notable dissolution. Our findings indicate that conditions detrimental to high-latitude ecosystems could develop within decades, not centuries as suggested previously.

Oceanic vertical mixing: A review and a model with a nonlocal boundary layer parameterization

Abstract: If model parameterizations of unresolved physics, such as the variety of upper ocean mixing processes, are to hold over the large range of time and space scales of importance to climate, they must be strongly physically based. Observations, theories, and models of oceanic vertical mixing are surveyed. Two distinct regimes are identified: ocean mixing in the boundary layer near the surface under a variety of surface forcing conditions (stabilizing, destabilizing, and wind driven), and mixing in the ocean interior due to internal waves, shear instability, and double diffusion (arising from the different molecular diffusion rates of heat and salt). Mixing schemes commonly applied to the upper ocean are shown not to contain some potentially important boundary layer physics. Therefore a new parameterization of oceanic boundary layer mixing is developed to accommodate some of this physics. It includes a scheme for determining the boundary layer depth h, where the turbulent contribution to the vertical shear of a bulk Richardson number is parameterized. Expressions for diffusivity and nonlocal transport throughout the boundary layer are given. The diffusivity is formulated to agree with similarity theory of turbulence in the surface layer and is subject to the conditions that both it and its vertical gradient match the interior values at h. This nonlocal “K profile parameterization” (KPP) is then verified and compared to alternatives, including its atmospheric counterparts. Its most important feature is shown to be the capability of the boundary layer to penetrate well into a stable thermocline in both convective and wind-driven situations. The diffusivities of the aforementioned three interior mixing processes are modeled as constants, functions of a gradient Richardson number (a measure of the relative importance of stratification to destabilizing shear), and functions of the double-diffusion density ratio, Rρ. Oceanic simulations of convective penetration, wind deepening, and diurnal cycling are used to determine appropriate values for various model parameters as weak functions of vertical resolution. Annual cycle simulations at ocean weather station Papa for 1961 and 1969–1974 are used to test the complete suite of parameterizations. Model and observed temperatures at all depths are shown to agree very well into September, after which systematic advective cooling in the ocean produces expected differences. It is argued that this cooling and a steady salt advection into the model are needed to balance the net annual surface heating and freshwater input. With these advections, good multiyear simulations of temperature and salinity can be achieved. These results and KPP simulations of the diurnal cycle at the Long-Term Upper Ocean Study (LOTUS) site are compared with the results of other models. It is demonstrated that the KPP model exchanges properties between the mixed layer and thermocline in a manner consistent with observations, and at least as well or better than alternatives.

Ocean Acidification: The Other CO 2 Problem

Abstract: Rising atmospheric carbon dioxide (CO2), primarily from human fossil fuel combustion, reduces ocean pH and causes wholesale shifts in seawater carbonate chemistry. The process of ocean acidification is well documented in field data, and the rate will accelerate over this century unless future CO2 emissions are curbed dramatically. Acidification alters seawater chemical speciation and biogeochemical cycles of many elements and compounds. One well-known effect is the lowering of calcium carbonate saturation states, which impacts shell-forming marine organisms from plankton to benthic molluscs, echinoderms, and corals. Many calcifying species exhibit reduced calcification and growth rates in laboratory experiments under high-CO2 conditions. Ocean acidification also causes an increase in carbon fixation rates in some photosynthetic organisms (both calcifying and noncalcifying). The potential for marine organisms to adapt to increasing CO2 and broader implications for ocean ecosystems are not well known; both are high priorities for future research. Although ocean pH has varied in the geological past, paleo-events may be only imperfect analogs to current conditions.

Climate–Carbon Cycle Feedback Analysis: Results from the C4MIP Model Intercomparison

Abstract: Eleven coupled climate–carbon cycle models used a common protocol to study the coupling between climate change and the carbon cycle. The models were forced by historical emissions and the Intergovernmental Panel on Climate Change (IPCC) Special Report on Emissions Scenarios (SRES) A2 anthropogenic emissions of CO2 for the 1850–2100 time period. For each model, two simulations were performed in order to isolate the impact of climate change on the land and ocean carbon cycle, and therefore the climate feedback on the atmospheric CO2 concentration growth rate. There was unanimous agreement among the models that future climate change will reduce the efficiency of the earth system to absorb the anthropogenic carbon perturbation. A larger fraction of anthropogenic CO2 will stay airborne if climate change is accounted for. By the end of the twenty-first century, this additional CO2 varied between 20 and 200 ppm for the two extreme models, the majority of the models lying between 50 and 100 ppm. The higher CO2 levels led to an additional climate warming ranging between 0.1° and 1.5°C. All models simulated a negative sensitivity for both the land and the ocean carbon cycle to future climate. However, there was still a large uncertainty on the magnitude of these sensitivities. Eight models attributed most of the changes to the land, while three attributed it to the ocean. Also, a majority of the models located the reduction of land carbon uptake in the Tropics. However, the attribution of the land sensitivity to changes in net primary productivity versus changes in respiration is still subject to debate; no consensus emerged among the models.

The Community Climate System Model Version 3 (CCSM3)

Abstract: The Community Climate System Model version 3 (CCSM3) has recently been developed and released to the climate community. CCSM3 is a coupled climate model with components representing the atmosphere, ocean, sea ice, and land surface connected by a flux coupler. CCSM3 is designed to produce realistic simulations over a wide range of spatial resolutions, enabling inexpensive simulations lasting several millennia or detailed studies of continental-scale dynamics, variability, and climate change. This paper will show results from the configuration used for climate-change simulations with a T85 grid for the atmosphere and land and a grid with approximately 1° resolution for the ocean and sea ice. The new system incorporates several significant improvements in the physical parameterizations. The enhancements in the model physics are designed to reduce or eliminate several systematic biases in the mean climate produced by previous editions of CCSM. These include new treatments of cloud processes, aerosol ...

The Theory of Island Biogeography

Abstract: Preface to the Princeton Landmarks in Biology Edition vii Preface xi Symbols Used xiii 1. The Importance of Islands 3 2. Area and Number of Speicies 8 3. Further Explanations of the Area-Diversity Pattern 19 4. The Strategy of Colonization 68 5. Invasibility and the Variable Niche 94 6. Stepping Stones and Biotic Exchange 123 7. Evolutionary Changes Following Colonization 145 8. Prospect 181 Glossary 185 References 193 Index 201

An Overview of CMIP5 and the Experiment Design

Abstract: The fifth phase of the Coupled Model Intercomparison Project (CMIP5) will produce a state-of-the- art multimodel dataset designed to advance our knowledge of climate variability and climate change. Researchers worldwide are analyzing the model output and will produce results likely to underlie the forthcoming Fifth Assessment Report by the Intergovernmental Panel on Climate Change. Unprecedented in scale and attracting interest from all major climate modeling groups, CMIP5 includes “long term” simulations of twentieth-century climate and projections for the twenty-first century and beyond. Conventional atmosphere–ocean global climate models and Earth system models of intermediate complexity are for the first time being joined by more recently developed Earth system models under an experiment design that allows both types of models to be compared to observations on an equal footing. Besides the longterm experiments, CMIP5 calls for an entirely new suite of “near term” simulations focusing on recent decades...

Ecological and Evolutionary Responses to Recent Climate Change

Abstract: Ecological changes in the phenology and distribution of plants and animals are occurring in all well-studied marine, freshwater, and terrestrial groups These observed changes are heavily biased in the directions predicted from global warming and have been linked to local or regional climate change through correlations between climate and biological variation, field and laboratory experiments, and physiological research Range-restricted species, particularly polar and mountaintop species, show severe range contractions and have been the first groups in which entire species have gone extinct due to recent climate change Tropical coral reefs and amphibians have been most negatively affected Predator-prey and plant-insect interactions have been disrupted when interacting species have responded differently to warming Evolutionary adaptations to warmer conditions have occurred in the interiors of species’ ranges, and resource use and dispersal have evolved rapidly at expanding range margins Observed genetic shifts modulate local effects of climate change, but there is little evidence that they will mitigate negative effects at the species level

The HITRAN 2008 molecular spectroscopic database

Abstract: This paper describes the contents of the 2016 edition of the HITRAN molecular spectroscopic compilation. The new edition replaces the previous HITRAN edition of 2012 and its updates during the intervening years. The HITRAN molecular absorption compilation is composed of five major components: the traditional line-by-line spectroscopic parameters required for high-resolution radiative-transfer codes, infrared absorption cross-sections for molecules not yet amenable to representation in a line-by-line form, collision-induced absorption data, aerosol indices of refraction, and general tables such as partition sums that apply globally to the data. The new HITRAN is greatly extended in terms of accuracy, spectral coverage, additional absorption phenomena, added line-shape formalisms, and validity. Moreover, molecules, isotopologues, and perturbing gases have been added that address the issues of atmospheres beyond the Earth. Of considerable note, experimental IR cross-sections for almost 300 additional molecules important in different areas of atmospheric science have been added to the database. The compilation can be accessed through www.hitran.org. Most of the HITRAN data have now been cast into an underlying relational database structure that offers many advantages over the long-standing sequential text-based structure. The new structure empowers the user in many ways. It enables the incorporation of an extended set of fundamental parameters per transition, sophisticated line-shape formalisms, easy user-defined output formats, and very convenient searching, filtering, and plotting of data. A powerful application programming interface making use of structured query language (SQL) features for higher-level applications of HITRAN is also provided.