S
Sergey Nurk
Publications - 6
Citations - 16981
Sergey Nurk is an academic researcher. The author has contributed to research in topics: Genome & Biology. The author has an hindex of 1, co-authored 1 publications receiving 12399 citations.
Papers
More filters
Journal ArticleDOI
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich,Sergey Nurk,Dmitry Antipov,Alexey Gurevich,Mikhail Dvorkin,Alexander S. Kulikov,Valery M. Lesin,Sergey I. Nikolenko,Son Pham,Andrey D. Prjibelski,Alexey V. Pyshkin,Alexander Sirotkin,Nikolay Vyahhi,Glenn Tesler,Max A. Alekseyev,Pavel A. Pevzner +15 more
TL;DR: SPAdes generates single-cell assemblies, providing information about genomes of uncultivatable bacteria that vastly exceeds what may be obtained via traditional metagenomics studies.
Posted ContentDOI
The complete sequence of a human Y chromosome
Arang Rhie,Sergey Nurk,Monika Cechová,Savannah J. Hoyt,Dylan J. Taylor,Nicolas Altemose,Paul W. Hook,Sergey Koren,Mikko Rautiainen,Ivan A. Alexandrov,Jamie Allen,Mobin Asri,Andrey Bzikadze,Nae-Chyun Chen,Chen-Shan Chin,Mark Diekhans,Paul Flicek,Giulio Formenti,Arkarachai Fungtammasan,Carlos García Girón,Erik Garrison,Ariel Gershman,Jennifer L. Gerton,Patrick G.S. Grady,Andrea Guarracino,Leanne Haggerty,Reza Halabian,Nancy F. Hansen,Robert S. Harris,Gabrielle A. Hartley,William T. Harvey,Marina Haukness,Jakob Heinz,Thibaut Hourlier,Robert Hubley,Sarah E. Hunt,Stephen Y. Hwang,Miten Jain,Rupesh K. Kesharwani,Alexandra P. Lewis,Heng Li,Glennis A. Logsdon,Julian K. Lucas,Wojciech Makalowski,Chris Markovic,Fergal J. Martin,Ann M Mc Cartney,Rajiv C. McCoy,Jennifer McDaniel,Brandy M. McNulty,Paul Medvedev,Alla Mikheenko,Katherine M. Munson,Terence Murphy,Hugh E. Olsen,Nathan D. Olson,L. F. Paulin,David Porubsky,Tamara A. Potapova,Fedor Ryabov,Steven L. Salzberg,Michael E.G. Sauria,Fritz J. Sedlazeck,Kishwar Shafin,V. A. Shepelev,Alaina Shumate,Jessica M. Storer,Likhitha Surapaneni,Angela M. Taravella Oill,Françoise Thibaud-Nissen,Winston Timp,Marta Tomaszkiewicz,Mitchell R. Vollger,Brian P. Walenz,Allison C. Watwood,Matthias H. Weissensteiner,Aaron M. Wenger,Melissa A. Wilson,Samantha Zarate,Yiming Zhu,Justin M. Zook,Evan E. Eichler,Rachel J. O’Neill,Michael C. Schatz,Karen H. Miga,Kateryna D. Makova,Adam M. Phillippy +86 more
TL;DR: The T2T-Y consortium presented the complete 62,460,029 base pair sequence of a human Y chromosome from the HG002 genome (T2T -Y) that corrects multiple errors in GRCh38-Y and adds over 30 million base pairs of sequence to the reference, revealing the complete ampliconic structures of TSPY, DAZ, and RBMY gene families; 41 additional protein-coding genes, mostly from the T SPY family; and an alternating pattern of human satellite 1 and 3 blocks in the heterochromatic Yq12 region as mentioned in this paper .
Journal ArticleDOI
Telomere-to-telomere assembly of diploid chromosomes with Verkko
Mikko Rautiainen,Sergey Nurk,Brian P. Walenz,Glennis A. Logsdon,David Porubsky,Arang Rhie,Evan E. Eichler,Adam M. Phillippy,Sergey Koren +8 more
Posted ContentDOI
Verkko: telomere-to-telomere assembly of diploid chromosomes
Mikko Rautiainen,Sergey Nurk,Brian P. Walenz,Glennis A. Logsdon,David Porubsky,Arang Rhie,Evan E. Eichler,Adam M. Phillippy,Sergey Koren +8 more
TL;DR: The Telomere-to-Telomere consortium recently assembled the first truly complete sequence of a human genome, but to resolve the most complex repeats, this project relied on manual integration of ultra-long Oxford Nanopore sequencing reads with a high-resolution assembly graph built from long, accurate PacBio HiFi reads.
Journal ArticleDOI
Increased mutation and gene conversion within human segmental duplications
Mitchell R. Vollger,Philip C. Dishuck,William T. Harvey,William S DeWitt,Xavi Guitart,Michael E. Goldberg,Allison N. Rozanski,Mobin Asri,Haley J. Abel,L. L. Antonacci-Fulton,Gunjan Baid,Carl Baker,Anastasiya Belyaeva,Konstantinos Billis,Guillaume Bourque,Silvia Buonaiuto,Andrew Carroll,Mark Chaisson,Pi-Chuan Chang,Xian Chang,Haoyu Cheng,Justin Jang Hann Chu,Sarah Cody,Vincenza Colonna,Daniel E. Cook,Robert Cook-Deegan,Omar E. Cornejo,Mark Diekhans,Daniel Doerr,Peter J.R. Ebert,Jana Ebler,Jordan M. Eizenga,Susan Fairley,Olivier Fedrigo,Adam Felsenfeld,Xiaowen Feng,Christian Fischer,Paul Flicek,Giulio Formenti,Adam Frankish,Robert S. Fulton,Yan Gao,Shilpa Garg,Erik Garrison,Nanibaa’ A. Garrison,Carlos García Girón,Richard E. Green,Cristian Groza,Andrea Guarracino,Leanne Haggerty,Ira M. Hall,Marina Haukness,David Haussler,Simon Heumos,Glenn Hickey,Thibaut Hourlier,Kerstin Howe,Miten Jain,Erich D. Jarvis,Hanlee P. Ji,Eimear E. Kenny,Barbara A. Koenig,Alexey Kolesnikov,Jan O. Korbel,Jennifer R. Kordosky,Sergey Koren,Hojoon Lee,Heng Li,Wen-Wei Liao,Shuangjia Lu,Tsung-Yu Lu,Julian K. Lucas,Santiago Marco-Sola,Pierre Marijon,Charles Markello,Tobias Marschall,Fergal J. Martin,Ann M McCartney,Jennifer McDaniel,Karen H. Miga,Matthew Mitchell,Jean Marcel Maurice Monlong,Jacquelyn Mouncastle,Moses N. Mwaniki,Maria Nattestad,Adam M. Novak,Sergey Nurk,Hugh E. Olsen,Nathan D. Olson,Benedict Paten,Trevor Pesout,Adam M. Phillippy,Alice B. Popejoy,Pjotr Prins,Daniela Puiu,Mikko Rautiainen,Allison A. Regier,Arang Rhie,Samuel A. Sacco,Ashley D. Sanders,Valerie A. Schneider,Baergen I. Schultz,Kishwar Shafin,Jonas Andreas Sibbesen,Jouni Sirén,Michael W. Smith,Heidi J. Sofia,Ahmad N. Abou Tayoun,Françoise Thibaud-Nissen,Chad Tomlinson,Francesca Floriana Tricomi,Flavia Villani,Justin Wagner,Brian P. Walenz,Ting Wang,Jonathan Wood,Aleksey V. Zimin,Justin M. Zook,Katherine M. Munson,Alexandra P. Lewis,Kendra Hoekzema,Glennis A. Logsdon,David Porubsky,Kelley Harris,PingHsun Hsieh,Evan E. Eichler +125 more
TL;DR: In this article , the authors constructed 1:1 unambiguous alignments spanning high-identity segmental duplications across 102 human haplotypes and compared the pattern of SNVs between unique and duplicated regions.