S
Shivakumar Keerthikumar
Researcher at Peter MacCallum Cancer Centre
Publications - 58
Citations - 7941
Shivakumar Keerthikumar is an academic researcher from Peter MacCallum Cancer Centre. The author has contributed to research in topics: Prostate cancer & Gene. The author has an hindex of 27, co-authored 55 publications receiving 6557 citations. Previous affiliations of Shivakumar Keerthikumar include Kuvempu University & University of Melbourne.
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Journal ArticleDOI
Human Protein Reference Database—2009 update
T. S. Keshava Prasad,Renu Goel,Kumaran Kandasamy,Kumaran Kandasamy,Shivakumar Keerthikumar,Sameer Kumar,Suresh Mathivanan,Deepthi Telikicherla,Rajesh Raju,Beema Shafreen,Abhilash K. Venugopal,Lavanya Balakrishnan,Arivusudar Marimuthu,Sutopa Banerjee,Devi S. Somanathan,Aimy Sebastian,Sandhya G. Rani,Somak Ray,C. J. Harrys Kishore,Sashi Kanth,Mukhtar Ahmed,Manoj Kumar Kashyap,Manoj Kumar Kashyap,Riaz Mohmood,Y. L. Ramachandra,Venkatarangaiah Krishna,B. Abdul Rahiman,Subburaman Mohan,Prathibha Ranganathan,Subhashri Ramabadran,Raghothama Chaerkady,Akhilesh Pandey +31 more
TL;DR: A number of new features in HPRD are added, including PhosphoMotif Finder, which allows users to find the presence of over 320 experimentally verified phosphorylation motifs in proteins of interest, and a protein distributed annotation system—Human Proteinpedia.
Journal ArticleDOI
FunRich: An open access standalone functional enrichment and interaction network analysis tool
Mohashin Pathan,Shivakumar Keerthikumar,Ching-Seng Ang,Lahiru Gangoda,Camelia Quek,Nicholas A. Williamson,Dmitri Mouradov,Oliver M. Sieber,Oliver M. Sieber,Richard J. Simpson,Agus Salim,Antony Bacic,Andrew F. Hill,Andrew F. Hill,David A. Stroud,Michael T. Ryan,Johnson I. Agbinya,John M. Mariadason,Antony W. Burgess,Antony W. Burgess,Suresh Mathivanan +20 more
TL;DR: FunRich is an open access, standalone functional enrichment and network analysis tool that permits for the tool to be exploited as a skeleton for enrichment analysis irrespective of the data type or organism used.
Journal ArticleDOI
ExoCarta: A Web-Based Compendium of Exosomal Cargo
Shivakumar Keerthikumar,David Chisanga,Dinuka Ariyaratne,Haidar Al Saffar,Sushma Anand,Kening Zhao,Monisha Samuel,Mohashin Pathan,Markandeya Jois,Naveen Chilamkurti,Lahiru Gangoda,Suresh Mathivanan +11 more
TL;DR: ExoCarta is described, a manually curated Web-based compendium of exosomal proteins, RNAs and lipids, which features dynamic protein-protein interaction networks and biological pathways of exOSomal proteins.
Journal ArticleDOI
NetPath: a public resource of curated signal transduction pathways
Kumaran Kandasamy,Subburaman Mohan,Rajesh Raju,Shivakumar Keerthikumar,Ghantasala S. Sameer Kumar,Abhilash K. Venugopal,Deepthi Telikicherla,Daniel J. Navarro,Suresh Mathivanan,Christian Pecquet,Sashi Kanth Gollapudi,Sudhir Gopal Tattikota,Shyam Mohan,Hariprasad Padhukasahasram,Yashwanth Subbannayya,Renu Goel,Harrys K.C. Jacob,Jun Zhong,Raja Sekhar,Vishalakshi Nanjappa,Lavanya Balakrishnan,Roopashree Subbaiah,Y. L. Ramachandra,B. Abdul Rahiman,T. S. Keshava Prasad,Jian Xin Lin,Jon C. D. Houtman,Stephen Desiderio,Jean-Christophe Renauld,Stefan N. Constantinescu,Osamu Ohara,Toshio Hirano,Masato Kubo,S. Singh,Purvesh Khatri,Sorin Draghici,Gary D. Bader,Gary D. Bader,Chris Sander,Warren J. Leonard,Akhilesh Pandey +40 more
TL;DR: NetPath provides detailed maps of a number of immune signaling pathways, which include approximately 1,600 reactions annotated from the literature and more than 2,800 instances of transcriptionally regulated genes - all linked to over 5,500 published articles.
Journal ArticleDOI
A novel community driven software for functional enrichment analysis of extracellular vesicles data
Mohashin Pathan,Shivakumar Keerthikumar,David Chisanga,Riccardo Alessandro,Ching-Seng Ang,Philip W. Askenase,Arsen O. Batagov,Alberto Benito-Martin,Giovanni Camussi,Aled Clayton,Federica Collino,Dolores Di Vizio,Juan M. Falcón-Pérez,Pedro Fonseca,Pamali Fonseka,Simona Fontana,Yong Song Gho,An Hendrix,Esther N. M. Nolte-‘t Hoen,Nunzio Iraci,Kenneth Kastaniegaard,Thomas Kislinger,Joanna Kowal,Igor V. Kurochkin,Tommaso Leonardi,Yaxuan Liang,Alicia Llorente,Taral R. Lunavat,Sayantan Maji,Francesca Monteleone,Anders Øverbye,Theocharis Panaretakis,Tushar Patel,Héctor Peinado,Stefano Pluchino,Simona Principe,Göran Ronquist,Felix Royo,Susmita Sahoo,Cristiana Spinelli,Allan Stensballe,Clotilde Théry,Martijn J. C. van Herwijnen,Marca H. M. Wauben,Joanne L. Welton,Kening Zhao,Suresh Mathivanan +46 more
TL;DR: A novel community-driven approach to build a comprehensive functional enrichment analysis tool using the existing FunRich tool as a template and inviting researchers to request additional features and/or changes was able to implement 90% of the requested features.